Thhalv10005497m.g (Eutrema salsugineum)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 Thhalv10005497m.g T247334_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD23
M06964_2.00 		Arabidopsis thaliana
NGCGNDRAWNNCGCN
NGCGNNWTYHNCGCN		 Dap-seq
OMalley et al.(2016)
LBD23_col_a 		0.869 0.869
LBD23
M06965_2.00 		Arabidopsis thaliana
DGCGDDRRWNNCGCN
NGCGNNWYYHHCGCH		 Dap-seq
OMalley et al.(2016)
LBD23_colamp_a 		0.869 0.869
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Thhalv10005497m LOB 5 103

Links

Other LOB family TFs
Other Eutrema salsugineum TFs

16 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo00285s360 Brassica oleracea Bo00285s360 I 0.869
Bo3g065910 Brassica oleracea Bo3g065910 I 0.879
Bo7g083780 Brassica oleracea Bo7g083780 I 0.889
Bostr.0556s0333 Boechera stricta Bostr.0556s0333 I 0.889
Bra025217 Brassica rapa Bra025217 I 0.718
Bra032938 Brassica rapa Bra032938 I 0.814
Cagra.3598s0013 Capsella grandiflora Cagra.3598s0013 I 0.869
Carubv10018979m.g Capsella rubella Carubv10018979m.g I 0.869
evm.TU.supercontig_1.335 Carica papaya evm.TU.supercontig_1.335 I 0.727
evm.TU.supercontig_1.339 Carica papaya evm.TU.supercontig_1.339 I 0.717
evm.TU.supercontig_50.154 Carica papaya evm.TU.supercontig_50.154 N 0.738
LBD23 Arabidopsis thaliana AT3G26620 D 0.869
LBD24 Arabidopsis thaliana AT3G26660 I 0.869
scaffold_500562.1 Arabidopsis lyrata scaffold_500562.1 I 0.879
TCM_035123 Theobroma cacao TCM_035123 N 0.727
Thhalv10015971m.g Eutrema salsugineum Thhalv10015971m.g I 0.919