AT5G38620 (Arabidopsis thaliana)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 AT5G38620 T252920_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT5G38620
M10931_2.00		 Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AT5G38620_01		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AT5G38620.1 MADS box 13 64

Links

Other MADS box family TFs
Other Arabidopsis thaliana TFs

5 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
22143_YPL038W Saccharomyces mikatae 22143_YPL038W I 0.000
23564_YPL038W Saccharomyces paradoxus 23564_YPL038W I 0.000
25018_YPL038W Saccharomyces bayanus 25018_YPL038W I 0.000
3987_YDR253C Saccharomyces mikatae 3987_YDR253C I 0.000
4678_YDR253C Saccharomyces paradoxus 4678_YDR253C I 0.000
BN7_573 Wickerhamomyces ciferrii BN7_573 I 0.000
HPODL_01443 Ogataea parapolymorpha HPODL_01443 I 0.000
KAFR_0E02900 Kazachstania africana KAFR_0E02900 I 0.000
KLLA0_D11902g Kluyveromyces lactis KLLA0_D11902g I 0.000
KLTH0E11330g Lachancea thermotolerans KLTH0E11330g I 0.000
KLTH0E11330g Kluyveromyces thermotolerans KLTH0E11330g I 0.000
Kwal_11824 Kluyveromyces waltii Kwal_11824 I 0.000
LALA0_S04e04720g Lachancea lanzarotensis LALA0_S04e04720g I 0.000
MET31 Saccharomyces cerevisiae YPL038W D 0.000
MET32 Saccharomyces cerevisiae YDR253C D 0.000
NCAS_0B02480 Naumovozyma castellii NCAS_0B02480 I 0.000
NCAS_0C02430 Naumovozyma castellii NCAS_0C02430 I 0.000
NDAI_0C05210 Naumovozyma dairenensis NDAI_0C05210 I 0.000
PAS_chr1-3_0170 Komagataella pastoris PAS_chr1-3_0170 I 0.000
SAKL0H11440g Lachancea kluyveri SAKL0H11440g I 0.000
Scas_Contig568.5 Saccharomyces castellii Scas_Contig568.5 I 0.000
Scas_Contig721.56 Saccharomyces castellii Scas_Contig721.56 I 0.000
SKUD_139603 Saccharomyces kudriavzevii SKUD_139603 I 0.000
SU7_3598 Saccharomyces arboricola SU7_3598 I 0.000
TBLA_0A00350 Tetrapisispora blattae TBLA_0A00350 I 0.000
TPHA_0L01320 Tetrapisispora phaffii TPHA_0L01320 I 0.000
XP_002489513.1 Pichia pastoris XP_002489513.1 I 0.000
ZBAI_00597 Zygosaccharomyces bailii ZBAI_00597 I 0.000
ZBAI_05898 Zygosaccharomyces bailii ZBAI_05898 I 0.000
ZYRO0F08162g Zygosaccharomyces rouxii ZYRO0F08162g I 0.000