CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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evm.TU.supercontig_34.41
(
Carica papaya
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00319 (SRF-TF)
IPR002100
evm.TU.supercontig_34.41
T258226_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
evm.model.supercontig_34.41
MADS box
10
58
YIVNDKARKVAYKKRCKGLIKKVNELSILCDVEACAIIYGEYSSQPEVW
Links
Other
MADS box
family TFs
Other
Carica papaya
TFs
5 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
cassava19828.m1
Manihot esculenta
cassava19828.m1
I
0.708
gene18029-v1.0-hybrid
Fragaria vesca
gene18029-v1.0-hybrid
I
0.708
MDP0000846004
Malus domestica
MDP0000846004
I
0.750
Pm004396
Prunus mume
Pm004396
I
0.711
PRUPE_ppa018168mg
Prunus persica
PRUPE_ppa018168mg
I
0.711