Lus10014578.g (Linum usitatissimum)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Lus10014578.g T258558_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL80
M06994_2.00 		Arabidopsis thaliana
TCACCA
TGGTGA		 Dap-seq
OMalley et al.(2016)
FEM111_col_a 		0.812 0.812
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10014578 MADS box 10 58

Links

Other MADS box family TFs
Other Linum usitatissimum TFs

140 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AGL87 Arabidopsis thaliana AT1G22590 N
Bo5g038690 Brassica oleracea Bo5g038690 N
Bo7g057820 Brassica oleracea Bo7g057820 N
Bostr.12659s0111 Boechera stricta Bostr.12659s0111 N
Bra012335 Brassica rapa Bra012335 N
Bra024521 Brassica rapa Bra024521 N
Cagra.0114s0045 Capsella grandiflora Cagra.0114s0045 N
Cagra.2356s0007 Capsella grandiflora Cagra.2356s0007 N
Carubv10006189m.g Capsella rubella Carubv10006189m.g N
Carubv10011303m.g Capsella rubella Carubv10011303m.g N
Carubv10021540m.g Capsella rubella Carubv10021540m.g N
Carubv10021762m.g Capsella rubella Carubv10021762m.g N
Carubv10022252m.g Capsella rubella Carubv10022252m.g N
Thhalv10008961m.g Eutrema salsugineum Thhalv10008961m.g N