MDP0000123878 (Malus domestica)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 MDP0000123878 T258641_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL80
M06994_2.00 		Arabidopsis thaliana
TCACCA
TGGTGA		 Dap-seq
OMalley et al.(2016)
FEM111_col_a 		0.741 0.741
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
MDP0000123878 MADS box 1 28

Links

Other MADS box family TFs
Other Malus domestica TFs

13 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo9g078450 Brassica oleracea Bo9g078450 I 0.704
Bra029469 Brassica rapa Bra029469 I 0.704
Eucgr.E01736 Eucalyptus grandis Eucgr.E01736 I 0.704
LjSGA_057783.1 Lotus japonicus LjSGA_057783.1 I 0.815
LjT40B16.70.nc Lotus japonicus LjT40B16.70.nc I 0.704
Lus10014578.g Linum usitatissimum Lus10014578.g I 0.741
Lus10032108.g Linum usitatissimum Lus10032108.g I 0.704
MDP0000152718 Malus domestica MDP0000152718 I 0.852
MDP0000159587 Malus domestica MDP0000159587 I 0.852
MDP0000726295 Malus domestica MDP0000726295 I 1.000
POPTR_0005s00420 Populus trichocarpa POPTR_0005s00420 I 0.741
POPTR_0013s01880 Populus trichocarpa POPTR_0013s01880 I 0.704
VIT_14s0060g00300 Vitis vinifera VIT_14s0060g00300 I 0.741