ALUE_0001693901 (Ascaris lumbricoides)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 ALUE_0001693901 T259528_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
unc-120
M00684_2.00 		Caenorhabditis elegans
CHWAWWDGG
CCHWWTWDG		 PBM
Narasimhan et al.(2015)
pTH10822 		0.955 0.955
bs
M03915_2.00 		Drosophila melanogaster
NCCWTATAWGGN
NCCWTATAWGGN		 SELEX
Nitta et al.(2015)
bs_1 		0.955 0.955
bs
M03916_2.00 		Drosophila melanogaster
NCCWTAHAWGGH
DCCWTDTAWGGN		 SELEX
Nitta et al.(2015)
bs_2 		0.955 0.955
Srf
M00178_2.00 		Mus musculus
NNDDWWHHNN
NNDDWWHHNN		 PBM
Badis et al.(2009)
Srf_3509 		0.909 0.909
SRF
M03341_2.00 		Homo sapiens
DCCWTATATGGT
ACCATATAWGGH		 SELEX
Jolma et al.(2013)
SRF_1 		0.909 0.909
SRF
M03342_2.00 		Homo sapiens
TKHCCWTATATGGKMA
TKMCCATATAWGGDMA		 SELEX
Jolma et al.(2013)
SRF_2 		0.909 0.909
SRF
M05553_2.00 		Homo sapiens
CCNTANAWGG
CCWTNTANGG		 SELEX
Yin et al.(2017)
SRF_eDBD_HT-SELEX 		0.909 0.909
SRF
M07981_2.00 		Homo sapiens
NNNWDNCCAWAWAWGGNVD
HBNCCWTWTWTGGNHWNNN		 ChIP-seq
Gerstein et al.(2012)
GM12878_SRF_HudsonAlpha 		0.909 0.909
SRF
M07982_2.00 		Homo sapiens
CCAWATAAGGNMAD
HTKNCCTTATWTGG		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_SRF_HudsonAlpha 		0.909 0.909
SRF
M07983_2.00 		Homo sapiens
NNWNNCCAWAWAWGGNVD
HBNCCWTWTWTGGNNWNN		 ChIP-seq
Gerstein et al.(2012)
HepG2_SRF_HudsonAlpha 		0.909 0.909
SRF
M07984_2.00 		Homo sapiens
GNCCAWATADGGHMANN
NNTKDCCHTATWTGGNC		 ChIP-seq
Gerstein et al.(2012)
K562_SRF_HudsonAlpha 		0.909 0.909
SRF
M09249_2.00 		Homo sapiens
HNWBVCCAWAWAWGGNRR
YYNCCWTWTWTGGBVWND		 Misc
Kulakovskiy et al.(2013)
SRF_HUMAN.H11MO.0.A 		0.909 0.909
Srf
M09254_2.00 		Mus musculus
NWDVCCAWAWAWGGVMR
YKBCCWTWTWTGGBHWN		 Misc
Kulakovskiy et al.(2013)
SRF_MOUSE.H11MO.0.A 		0.909 0.909
Srf
M09598_2.00 		Mus musculus
CCWWATWWGGNH
DNCCWWATWWGG		 Misc
Heinz et al.(2010)
PUER-Srf_Sullivan_et_al. 		0.909 0.909
SRF
M10947_2.00 		Homo sapiens
MNBWCCWTATAWGGGCAT
ATGCCCWTATAWGGWVNK		 Transfac
Matys et al.(2006)
V$SRF_01 		0.909 0.909
SRF
M10948_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_02 		0.909 0.909
SRF
M10949_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_03 		0.909 0.909
SRF
M10950_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_09 		0.909 0.909
SRF
M10951_2.00 		Homo sapiens
DCCWTATAWGGVSHB
VDSBCCWTATAWGGH		 Transfac
Matys et al.(2006)
V$SRF_C 		0.909 0.909
SRF
M10952_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q3 		0.909 0.909
SRF
M10953_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q4 		0.909 0.909
SRF
M10954_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q5_01 		0.909 0.909
SRF
M10955_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q5_02 		0.909 0.909
SRF
M10956_2.00 		Homo sapiens
BNCCAWATAWGGVN
NBCCWTATWTGGNV		 Transfac
Matys et al.(2006)
V$SRF_Q6 		0.909 0.909
SRF
M05554_2.00 		Homo sapiens
CCNTAYAWGG
CCWTRTANGG		 SELEX
Yin et al.(2017)
SRF_eDBD_Methyl-HT-SELEX 		0.909 0.909
MCM1
M01558_2.00 		Saccharomyces cerevisiae
YNNWWNNRGN
NCYNNWWNNR		 PBM
Zhu et al.(2009)
Mcm1 		0.727 0.727
ARG80
M08426_2.00 		Saccharomyces cerevisiae
WGACDC
GHGTCW		 ChIP-chip
Mathelier et al.(2014)
MA0271.1 		0.727 0.727
ARG80
M08588_2.00 		Saccharomyces cerevisiae
NNDVCBNVBDNGRHAR
YTDYCNHVBNVGBHNN		 Misc
DeBoer et al.(2011)
YMR042W_1483 		0.727 0.727
MCM1
M08589_2.00 		Saccharomyces cerevisiae
HNHTWCCBDWWHVGGAHDHN
NDHDTCCBDWWHVGGWADND		 Misc
DeBoer et al.(2011)
YMR043W_831 		0.727 0.727
ARG80
M10989_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$ARGRI_01 		0.727 0.727
MCM1
M10990_2.00 		Saccharomyces cerevisiae
WNDCCYAAWNNGGWMW
WKWCCNNWTTRGGHNW		 Transfac
Matys et al.(2006)
F$MCM1_01 		0.727 0.727
MCM1
M10991_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$MCM1_02 		0.727 0.727
MCM1
M10992_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$MCM1_Q6 		0.727 0.727
MCM1
M08458_2.00 		Saccharomyces cerevisiae
TTCCYRAWNNGG
CCNNWTYRGGAA		 COMPILED
Mathelier et al.(2014)
MA0331.1 		0.727 0.727
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ALUE_0001693901-mRNA-1 MADS box 9 30

Links

Other MADS box family TFs
Other Ascaris lumbricoides TFs

43 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cmyd_10000491 Chelonia mydas Cmyd_10000491 I
ENSACAG00000022533 Anolis carolinensis ENSACAG00000022533 I
ENSAMEG00000016851 Ailuropoda melanoleuca ENSAMEG00000016851 I
ENSBTAP00000001420-D1 Bos grunniens ENSBTAP00000001420-D1 I
ENSCSAG00000011345 Chlorocebus sabaeus ENSCSAG00000011345 I
ENSETEG00000008987 Echinops telfairi ENSETEG00000008987 I
ENSETEG00000009984 Echinops telfairi ENSETEG00000009984 N
ENSLACG00000014014 Latimeria chalumnae ENSLACG00000014014 N
ENSLAFG00000007483 Loxodonta africana ENSLAFG00000007483 I
ENSLAFG00000027348 Loxodonta africana ENSLAFG00000027348 N
ENSLAFG00000028299 Loxodonta africana ENSLAFG00000028299 I
ENSLAFG00000030880 Loxodonta africana ENSLAFG00000030880 I
ENSLAFG00000032042 Loxodonta africana ENSLAFG00000032042 I
ENSLOCG00000013832 Lepisosteus oculatus ENSLOCG00000013832 N
ENSMEUG00000013135 Macropus eugenii ENSMEUG00000013135 I
ENSMLUG00000006411 Myotis lucifugus ENSMLUG00000006411 I
ENSMLUG00000025140 Myotis lucifugus ENSMLUG00000025140 I
ENSMPUG00000009017 Mustela putorius furo ENSMPUG00000009017 I
ENSNLEG00000009730 Nomascus leucogenys ENSNLEG00000009730 I
ENSOCUG00000001138 Oryctolagus cuniculus ENSOCUG00000001138 I
ENSOCUG00000022109 Oryctolagus cuniculus ENSOCUG00000022109 I
ENSP00000269305 Macaca fascicularis ENSP00000269305 I
ENSPANG00000024061 Papio anubis ENSPANG00000024061 I
ENSPPYG00000007934 Pongo abelii ENSPPYG00000007934 I
ENSPSIG00000013302 Pelodiscus sinensis ENSPSIG00000013302 I
ENSSHAG00000015510 Sarcophilus harrisii ENSSHAG00000015510 I
ENSSTOG00000022774 Ictidomys tridecemlineatus ENSSTOG00000022774 I
LOC100910954 Rattus norvegicus ENSRNOG00000046657 I
Myotis_brandtii_TP53_10021059 Myotis brandtii Myotis_brandtii_TP53_10021059 I
Pvit_02042 Pogona vitticeps Pvit_02042 N
TP53 Sorex araneus ENSSARG00000006206 I
TP53 Sus scrofa ENSSSCG00000017950 I
TP53 Tursiops truncatus ENSTTRG00000010250 I
Tp53 Rattus norvegicus ENSRNOG00000010756 I
TP53 Pan troglodytes ENSPTRG00000008703 I
TP53 Canis familiaris ENSCAFG00000016714 I
TP53 Bos taurus ENSBTAG00000001069 I
TP53 Ochotona princeps ENSOPRG00000006441 I
TP53 Procavia capensis ENSPCAG00000012725 I
TP53 Gorilla gorilla ENSGGOG00000009786 I
TP53 Otolemur garnettii ENSOGAG00000016871 I
TP53 Macaca mulatta ENSMMUG00000008639 I
TP53 Callithrix jacchus ENSCJAG00000014978 I
TP53 Cavia porcellus ENSCPOG00000014252 I
TP53 Microcebus murinus ENSMICG00000014853 I
tp53 Danio rerio ENSDARG00000035559 I
TP53 Dasypus novemcinctus ENSDNOG00000005252 I
TP53 Equus caballus ENSECAG00000008126 I
TP53 Erinaceus europaeus ENSEEUG00000014573 I
TP53 Felis catus ENSFCAG00000009623 I
TP53 Homo sapiens ENSG00000141510 D
Trp53 Mus musculus ENSMUSG00000059552 D