Cmyd_10012649 (Chelonia mydas)
MBD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF01429 (MBD) IPR001739 Cmyd_10012649 T261257_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MBD2
M09256_2.00 		Homo sapiens
VSGKCCGGMKR
YMKCCGGMCSB		 Misc
Kulakovskiy et al.(2013)
MBD2_HUMAN.H11MO.0.B 		0.705 0.705
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cmyd_10012649 MBD 2 40
Cmyd_10012649 MBD 46 164

Links

Other MBD family TFs
Other Chelonia mydas TFs

37 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30068.m002516 Ricinus communis 30068.m002516 I 0.000
AMTR_s00057p00141830 Amborella trichopoda AMTR_s00057p00141830 I 0.000
Aquca_013_00067 Aquilegia coerulea Aquca_013_00067 I 0.000
ARF11 Arabidopsis thaliana AT2G46530 I 0.000
ARF11 Arabidopsis lyrata scaffold_403621.1 I 0.000
ARF12 Arabidopsis thaliana AT1G34310 N 0.000
ARF14 Arabidopsis thaliana AT1G35540 N 0.000
ARF18 Arabidopsis thaliana AT3G61830 I 0.000
ARF18 Arabidopsis lyrata fgenesh1_pg.C_scaffold_5002633 I 0.000
ARF2 Vitis vinifera VIT_17s0000g00320 I 0.000
ARF22 Arabidopsis thaliana AT1G34390 N 0.000
ARF23 Oryza indica BGIOSGA033901 I 0.000
ARF9 Arabidopsis lyrata Al_scaffold_0007_1752 I 0.000
ARF9 Arabidopsis thaliana AT4G23980 I 0.000
Bo01141s010 Brassica oleracea Bo01141s010 I 0.000
Bo1g037360 Brassica oleracea Bo1g037360 I 0.000
Bo3g039330 Brassica oleracea Bo3g039330 I 0.000
Bo4g008150 Brassica oleracea Bo4g008150 I 0.000
Bo7g109250 Brassica oleracea Bo7g109250 I 0.000
Bo8g097320 Brassica oleracea Bo8g097320 I 0.000
Bostr.1040s0030 Boechera stricta Bostr.1040s0030 I 0.000
Bostr.13158s0186 Boechera stricta Bostr.13158s0186 I 0.000
Bostr.15774s0314 Boechera stricta Bostr.15774s0314 N 0.000
Bostr.25993s0113 Boechera stricta Bostr.25993s0113 I 0.000
Bostr.7867s0204 Boechera stricta Bostr.7867s0204 I 0.000
Bra004530 Brassica rapa Bra004530 I 0.000
Bra013748 Brassica rapa Bra013748 I 0.000
Bra014419 Brassica rapa Bra014419 I 0.000
Bra019255 Brassica rapa Bra019255 I 0.000
BRADI4G17410 Brachypodium distachyon BRADI4G17410 I 0.000
Cagra.0050s0046 Capsella grandiflora Cagra.0050s0046 I 0.000
Cagra.0483s0062 Capsella grandiflora Cagra.0483s0062 I 0.000
Carubv10011010m.g Capsella rubella Carubv10011010m.g N 0.000
Carubv10011321m.g Capsella rubella Carubv10011321m.g N 0.000
Carubv10012424m.g Capsella rubella Carubv10012424m.g N 0.000
Carubv10018954m.g Capsella rubella Carubv10018954m.g I 0.000
Carubv10019454m.g Capsella rubella Carubv10019454m.g N 0.000
Carubv10022841m.g Capsella rubella Carubv10022841m.g I 0.000
cassava17839.valid.m1 Manihot esculenta cassava17839.valid.m1 I 0.000
cassava17840.valid.m1 Manihot esculenta cassava17840.valid.m1 I 0.000
cassava29828.valid.m1 Manihot esculenta cassava29828.valid.m1 I 0.000
cassava37256.valid.m1 Manihot esculenta cassava37256.valid.m1 I 0.000
cassava42787.valid.m1 Manihot esculenta cassava42787.valid.m1 I 0.000
cassava42788.valid.m1 Manihot esculenta cassava42788.valid.m1 I 0.000
cassava42789.valid.m1 Manihot esculenta cassava42789.valid.m1 I 0.000
cassava43609.valid.m1 Manihot esculenta cassava43609.valid.m1 I 0.000
cassava45422.m1 Manihot esculenta cassava45422.m1 I 0.000
cassava45423.m1 Manihot esculenta cassava45423.m1 I 0.000
cassava45424.m1 Manihot esculenta cassava45424.m1 I 0.000
cassava45425.m1 Manihot esculenta cassava45425.m1 I 0.000
cassava45426.m1 Manihot esculenta cassava45426.m1 I 0.000
Ca_21948 Cicer arietinum Ca_21948 I 0.000
Ca_23296 Cicer arietinum Ca_23296 I 0.000
chr1.LjT43L07.10.nd Lotus japonicus chr1.LjT43L07.10.nd I 0.000
chr4.CM0175.280.nc Lotus japonicus chr4.CM0175.280.nc I 0.000
Ciclev10019131m.g Citrus clementina Ciclev10019131m.g I 0.000
Ciclev10019174m.g Citrus clementina Ciclev10019174m.g I 0.000
Ciclev10030696m.g Citrus clementina Ciclev10030696m.g I 0.000
Cla013021 Citrullus lanatus Cla013021 I 0.000
Cla019614 Citrullus lanatus Cla019614 I 0.000
Cucsa.078800 Cucumis sativus Cucsa.078800 I 0.000
Cucsa.114840 Cucumis sativus Cucsa.114840 I 0.000
Cucsa.156920 Cucumis sativus Cucsa.156920 I 0.000
Eucgr.D01764 Eucalyptus grandis Eucgr.D01764 I 0.000
Eucgr.E00888 Eucalyptus grandis Eucgr.E00888 I 0.000
Eucgr.K02197 Eucalyptus grandis Eucgr.K02197 I 0.000
evm.TU.supercontig_15.1 Carica papaya evm.TU.supercontig_15.1 I 0.000
evm.TU.supercontig_96.40 Carica papaya evm.TU.supercontig_96.40 I 0.000
fgenesh1_pg.C_scaffold_1003068 Arabidopsis lyrata fgenesh1_pg.C_scaffold_1003068 N 0.000
fgenesh1_pm.C_scaffold_3002720 Arabidopsis lyrata fgenesh1_pm.C_scaffold_3002720 N 0.000
fgenesh2_kg.1__3608__AT1G35540.1 Arabidopsis lyrata fgenesh2_kg.1__3608__AT1G35540.1 N 0.000
gene06434-v1.0-hybrid Fragaria vesca gene06434-v1.0-hybrid I 0.000
gene19138-v1.0-hybrid Fragaria vesca gene19138-v1.0-hybrid I 0.000
gene25123-v1.0-hybrid Fragaria vesca gene25123-v1.0-hybrid I 0.000
GLYMA01G25270 Glycine max GLYMA01G25270 I 0.000
GLYMA03G17450 Glycine max GLYMA03G17450 I 0.000
GLYMA03G41920 Glycine max GLYMA03G41920 I 0.000
GLYMA04G37760 Glycine max GLYMA04G37760 I 0.000
GLYMA06G17320 Glycine max GLYMA06G17320 I 0.000
GLYMA07G06060 Glycine max GLYMA07G06060 I 0.000
GLYMA07G16170 Glycine max GLYMA07G16170 I 0.000
GLYMA16G02650 Glycine max GLYMA16G02650 I 0.000
GLYMA18G40180 Glycine max GLYMA18G40180 I 0.000
Gorai.001G054600 Gossypium raimondii Gorai.001G054600 I 0.000
Gorai.001G153900 Gossypium raimondii Gorai.001G153900 I 0.000
Gorai.003G078000 Gossypium raimondii Gorai.003G078000 I 0.000
Gorai.007G026900 Gossypium raimondii Gorai.007G026900 I 0.000
Gorai.007G109500 Gossypium raimondii Gorai.007G109500 I 0.000
Gorai.008G126200 Gossypium raimondii Gorai.008G126200 I 0.000
Gorai.008G210200 Gossypium raimondii Gorai.008G210200 I 0.000
GRMZM2G006042 Zea mays GRMZM2G006042 I 0.000
GRMZM2G116557 Zea mays GRMZM2G116557 I 0.000
GRMZM2G352159 Zea mays GRMZM2G352159 I 0.000
GSMUA_Achr10G15100_001 Musa acuminata GSMUA_Achr10G15100_001 I 0.000
GSMUA_Achr6G07390_001 Musa acuminata GSMUA_Achr6G07390_001 I 0.000
LjSGA_059323.1 Lotus japonicus LjSGA_059323.1 I 0.000
LjSGA_068216.1 Lotus japonicus LjSGA_068216.1 I 0.000
LPERR11G11950 Leersia perrieri LPERR11G11950 I 0.000
LPERR12G09930 Leersia perrieri LPERR12G09930 I 0.000
Lus10023058.g Linum usitatissimum Lus10023058.g I 0.000
Lus10032413.g Linum usitatissimum Lus10032413.g I 0.000
MDP0000139073 Malus domestica MDP0000139073 I 0.000
MDP0000194603 Malus domestica MDP0000194603 I 0.000
MDP0000258032 Malus domestica MDP0000258032 I 0.000
mgf005549m Mimulus guttatus mgf005549m I 0.000
mgf006511m Mimulus guttatus mgf006511m I 0.000
mgf015308m Mimulus guttatus mgf015308m I 0.000
MTR_4g021580 Medicago truncatula MTR_4g021580 I 0.000
MTR_7g062540 Medicago truncatula MTR_7g062540 I 0.000
MTR_8g100050 Medicago truncatula MTR_8g100050 I 0.000
OB11G21910 Oryza brachyantha OB11G21910 I 0.000
OB12G20020 Oryza brachyantha OB12G20020 I 0.000
OBART11G15270 Oryza barthii OBART11G15270 I 0.000
OGLUM11G14710 Oryza glumaepatula OGLUM11G14710 I 0.000
OLONG_022378 Oryza longistaminata OLONG_022378 I 0.000
OMERI11G12590 Oryza meridionalis OMERI11G12590 I 0.000
ONIVA12G10760 Oryza nivara ONIVA12G10760 I 0.000
OPUNC11G12650 Oryza punctata OPUNC11G12650 I 0.000
orange1.1g004792m.g Citrus sinensis orange1.1g004792m.g I 0.000
orange1.1g005368m.g Citrus sinensis orange1.1g005368m.g I 0.000
orange1.1g005491m.g Citrus sinensis orange1.1g005491m.g I 0.000
ORGLA11G0129300 Oryza glaberrima ORGLA11G0129300 I 0.000
ORUFI11G16290 Oryza rufipogon ORUFI11G16290 I 0.000
OS11G0523800 Oryza sativa OS11G0523800 I 0.000
Pavir.Cb00753 Panicum virgatum Pavir.Cb00753 I 0.000
Pavir.J11622 Panicum virgatum Pavir.J11622 I 0.000
PDK_20s1477241g001 Phoenix dactylifera PDK_20s1477241g001 I 0.000
PDK_20s1585531g001 Phoenix dactylifera PDK_20s1585531g001 I 0.000
PDK_20s1651081g001 Phoenix dactylifera PDK_20s1651081g001 I 0.000
PGSC0003DMG400000118 Solanum tuberosum PGSC0003DMG400000118 I 0.000
PGSC0003DMG400012261 Solanum tuberosum PGSC0003DMG400012261 I 0.000
PK02218.1 Cannabis sativa PK02218.1 I 0.000
PK07332.1 Cannabis sativa PK07332.1 I 0.000
PK16974.1 Cannabis sativa PK16974.1 I 0.000
Pm018352 Prunus mume Pm018352 I 0.000
Pm024149 Prunus mume Pm024149 I 0.000
POPTR_0001s10900 Populus trichocarpa POPTR_0001s10900 I 0.000
POPTR_0002s17350 Populus trichocarpa POPTR_0002s17350 I 0.000
POPTR_0003s14200 Populus trichocarpa POPTR_0003s14200 I 0.000
POPTR_0012s10790 Populus trichocarpa POPTR_0012s10790 I 0.000
POPTR_0014s09560 Populus trichocarpa POPTR_0014s09560 I 0.000
POPTR_0015s11660 Populus trichocarpa POPTR_0015s11660 I 0.000
PRUPE_ppa002230mg Prunus persica PRUPE_ppa002230mg I 0.000
PRUPE_ppa002617mg Prunus persica PRUPE_ppa002617mg I 0.000
SapurV1A.0003s1010 Salix purpurea SapurV1A.0003s1010 I 0.000
SapurV1A.0013s0230 Salix purpurea SapurV1A.0013s0230 I 0.000
SapurV1A.0035s0230 Salix purpurea SapurV1A.0035s0230 I 0.000
SapurV1A.1529s0070 Salix purpurea SapurV1A.1529s0070 I 0.000
Sb08g014320 Sorghum bicolor Sb08g014320 I 0.000
Si021216m.g Setaria italica Si021216m.g I 0.000
Solyc01g096070.2 Solanum lycopersicum Solyc01g096070.2 I 0.000
Solyc03g118290.2 Solanum lycopersicum Solyc03g118290.2 I 0.000
Solyc08g008380.2 Solanum lycopersicum Solyc08g008380.2 I 0.000
TCM_005126 Theobroma cacao TCM_005126 I 0.000
TCM_008374 Theobroma cacao TCM_008374 I 0.000
TCM_016500 Theobroma cacao TCM_016500 I 0.000
TCM_029792 Theobroma cacao TCM_029792 I 0.000
Thhalv10001365m.g Eutrema salsugineum Thhalv10001365m.g I 0.000
Thhalv10005857m.g Eutrema salsugineum Thhalv10005857m.g I 0.000
Thhalv10024554m.g Eutrema salsugineum Thhalv10024554m.g I 0.000
Thhalv10029161m.g Eutrema salsugineum Thhalv10029161m.g I 0.000
VIT_02s0025g01740 Vitis vinifera VIT_02s0025g01740 I 0.000
VIT_15s0046g00290 Vitis vinifera VIT_15s0046g00290 I 0.000