Bo1g010040 (Brassica oleracea)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 Bo1g010040 T267061_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PC-MYB1
M07110_2.00 		Arabidopsis thaliana
NDWWNTDRCCGTTRN
NYAACGGYHANWWHN		 Dap-seq
OMalley et al.(2016)
MYB3R1_col_a 		0.878 0.957
PC-MYB1
M07111_2.00 		Arabidopsis thaliana
DWHNTDRCCGTTR
YAACGGYHANDWH		 Dap-seq
OMalley et al.(2016)
MYB3R1_colamp_a 		0.878 0.957
Q948S5_TOBAC
M11074_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MYBA2_01 		0.824 0.864
PK12011.1
M01279_2.00 		Cannabis sativa
HAACGGHHNN
NNDDCCGTTD		 PBM
Lambert et al.(2019)
pTH11423 		0.769 0.836
MYB3R4
M07125_2.00 		Arabidopsis thaliana
NDWWNTDRCCGTTRN
NYAACGGYHANWWHN		 Dap-seq
OMalley et al.(2016)
MYB3R4_col_a 		0.739 0.807
Q948S6_TOBAC
M11075_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MYBA1_01 		0.676 0.771
Q948S4_TOBAC
M11073_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MYBB_01 		0.669 0.707
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo1g010040.1 Myb 28 74
Bo1g010040.1 Myb 80 126
Bo1g010040.1 Myb 132 177

Links

Other Myb/SANT family TFs
Other Brassica oleracea TFs

144 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
CC1G_07060 Coprinopsis cinerea CC1G_07060 N
CERSUDRAFT_86751 Ceriporiopsis subvermispora CERSUDRAFT_86751 N
CERSUDRAFT_97877 Ceriporiopsis subvermispora CERSUDRAFT_97877 N
CY34DRAFT_84354 Suillus luteus CY34DRAFT_84354 N
FIBRA_08916 Fibroporia radiculosa FIBRA_08916 N
GALMADRAFT_137835 Galerina marginata GALMADRAFT_137835 N
GLOTRDRAFT_130692 Gloeophyllum trabeum GLOTRDRAFT_130692 N
JAAARDRAFT_207410 Jaapia argillacea JAAARDRAFT_207410 N
K443DRAFT_126823 Laccaria amethystina K443DRAFT_126823 N
LACBIDRAFT_296988 Laccaria bicolor LACBIDRAFT_296988 N
M404DRAFT_119566 Pisolithus tinctorius M404DRAFT_119566 N
M408DRAFT_289466 Serendipita vermifera M408DRAFT_289466 N
M408DRAFT_9264 Serendipita vermifera M408DRAFT_9264 N
M413DRAFT_446911 Hebeloma cylindrosporum M413DRAFT_446911 N
M413DRAFT_80533 Hebeloma cylindrosporum M413DRAFT_80533 N
PAXINDRAFT_117064 Paxillus involutus PAXINDRAFT_117064 N
PAXRUDRAFT_822141 Paxillus rubicundulus PAXRUDRAFT_822141 N
PHACADRAFT_193620 Phanerochaete carnosa PHACADRAFT_193620 N
PHLGIDRAFT_33887 Phlebiopsis gigantea PHLGIDRAFT_33887 N
PILCRDRAFT_6451 Piloderma croceum PILCRDRAFT_6451 N
PLICRDRAFT_116400 Plicaturopsis crispa PLICRDRAFT_116400 N
SCHCODRAFT_257056 Schizophyllum commune SCHCODRAFT_257056 N
SCLCIDRAFT_107566 Scleroderma citrinum SCLCIDRAFT_107566 N
SERLA73DRAFT_181398 Serpula lacrymans SERLA73DRAFT_181398 N