Bo5g023860 (Brassica oleracea)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 Bo5g023860 T267364_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT1G72740
M07033_2.00 		Arabidopsis thaliana
HMNAAACCCTAAWYY
RRWTTAGGGTTTNKD		 Dap-seq
OMalley et al.(2016)
AT1G72740_col_a 		0.824 0.872
AT1G72740
M07034_2.00 		Arabidopsis thaliana
HNWAACCCTAAHYHNNNHNNN
NNNDNNNDRDTTAGGGTTWND		 Dap-seq
OMalley et al.(2016)
AT1G72740_colamp_a 		0.824 0.872
OS01G0708000
M02326_2.00 		Oryza sativa
WRMCCTAVNN
NNBTAGGKYW		 PBM
Weirauch et al.(2014)
pTH8716 		0.808 0.745
TRB1
M01070_2.00 		Arabidopsis thaliana
WRMCCTAR
YTAGGKYW		 PBM
Sullivan et al.(2014)
pTH7117 		0.761 0.723
PK06103.1
M02348_2.00 		Cannabis sativa
TGCCCTAG
CTAGGGCA		 PBM
Weirauch et al.(2014)
pTH9649 		0.672 0.723
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo5g023860.1 Myb 5 57

Links

Other Myb/SANT family TFs
Other Brassica oleracea TFs

183 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00049p00217400 Amborella trichopoda AMTR_s00049p00217400 I
BGIOSGA006133 Oryza indica BGIOSGA006133 N
BGIOSGA014881 Oryza indica BGIOSGA014881 N
BRADI3G47627 Brachypodium distachyon BRADI3G47627 I
F775_00415 Aegilops tauschii F775_00415 N
F775_14938 Aegilops tauschii F775_14938 N
F775_30638 Aegilops tauschii F775_30638 I
GLYMA16G07501 Glycine max GLYMA16G07501 N
GLYMA19G00640 Glycine max GLYMA19G00640 N
GLYMA19G08510 Glycine max GLYMA19G08510 N
GRMZM2G038073 Zea mays GRMZM2G038073 N
GRMZM2G104078 Zea mays GRMZM2G104078 N
GSMUA_Achr9G01880_001 Musa acuminata GSMUA_Achr9G01880_001 I
GSMUA_AchrUn_randomG17050_001 Musa acuminata GSMUA_AchrUn_randomG17050_001 I
LPERR02G18380 Leersia perrieri LPERR02G18380 N
LPERR04G12800 Leersia perrieri LPERR04G12800 N
mgf018486m Mimulus guttatus mgf018486m I
OB02G30060 Oryza brachyantha OB02G30060 N
OBART02G22660 Oryza barthii OBART02G22660 N
OBART04G16110 Oryza barthii OBART04G16110 N
OGLUM02G22980 Oryza glumaepatula OGLUM02G22980 N
OGLUM04G16020 Oryza glumaepatula OGLUM04G16020 N
OLONG_005904 Oryza longistaminata OLONG_005904 N
OLONG_021848 Oryza longistaminata OLONG_021848 N
OMERI01G02010 Oryza meridionalis OMERI01G02010 N
OMERI02G22200 Oryza meridionalis OMERI02G22200 N
ONIVA02G25300 Oryza nivara ONIVA02G25300 N
ONIVA04G14230 Oryza nivara ONIVA04G14230 N
OPUNC02G20570 Oryza punctata OPUNC02G20570 N
OPUNC04G13980 Oryza punctata OPUNC04G13980 N
ORGLA02G0193300 Oryza glaberrima ORGLA02G0193300 N
ORUFI02G23890 Oryza rufipogon ORUFI02G23890 N
ORUFI04G17470 Oryza rufipogon ORUFI04G17470 N
OS02G0594800 Oryza sativa OS02G0594800 N
Pavir.Aa01341 Panicum virgatum Pavir.Aa01341 I
Pavir.Ab02181 Panicum virgatum Pavir.Ab02181 I
Pavir.Ga01597 Panicum virgatum Pavir.Ga01597 I
Pavir.Gb01338 Panicum virgatum Pavir.Gb01338 I
PDK_20s1381351g001 Phoenix dactylifera PDK_20s1381351g001 I
Sb04g024780 Sorghum bicolor Sb04g024780 N
Sb06g020103 Sorghum bicolor Sb06g020103 I
Si012740m.g Setaria italica Si012740m.g N
Si017393m.g Setaria italica Si017393m.g I
Traes_2DL_3757D78B3 Triticum aestivum Traes_2DL_3757D78B3 N
Traes_2DL_AE270CBAA Triticum aestivum Traes_2DL_AE270CBAA N
Traes_2DL_AE270CBAA1 Triticum aestivum Traes_2DL_AE270CBAA1 N
Traes_6AL_C14335DC8 Triticum aestivum Traes_6AL_C14335DC8 I
Traes_6BL_B27806C89 Triticum aestivum Traes_6BL_B27806C89 I
Traes_6DL_2F3586557 Triticum aestivum Traes_6DL_2F3586557 I