Bra028780 (Brassica rapa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 Bra028780 T268024_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT5G04760
M02304_2.00 		Arabidopsis thaliana
NDGATAAGGN
NCCTTATCHN		 PBM
Weirauch et al.(2014)
pTH7079 		0.803 0.902
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra028780.1-P Myb 3 51
Bra028780.1-P Myb 97 143

Links

Other Myb/SANT family TFs
Other Brassica rapa TFs

23 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30155.m001616 Ricinus communis 30155.m001616 I 0.680
AT5G04760 Arabidopsis thaliana AT5G04760 D 0.803
Bo2g006670 Brassica oleracea Bo2g006670 I 0.834
Bo3g002960 Brassica oleracea Bo3g002960 I 0.798
Bo9g178980 Brassica oleracea Bo9g178980 I 0.791
Bostr.13129s0486 Boechera stricta Bostr.13129s0486 I 0.791
Bra005818 Brassica rapa Bra005818 I 0.811
Bra009432 Brassica rapa Bra009432 I 0.791
Cagra.5249s0014 Capsella grandiflora Cagra.5249s0014 I 0.816
Carubv10003623m.g Capsella rubella Carubv10003623m.g I 0.816
Ca_05454 Cicer arietinum Ca_05454 I 0.691
Ciclev10016071m.g Citrus clementina Ciclev10016071m.g I 0.707
gene23544-v1.0-hybrid Fragaria vesca gene23544-v1.0-hybrid I 0.666
GLYMA10G42450 Glycine max GLYMA10G42450 I 0.706
GLYMA20G24600 Glycine max GLYMA20G24600 I 0.706
Lus10041088.g Linum usitatissimum Lus10041088.g N 0.666
MDP0000289018 Malus domestica MDP0000289018 I 0.670
MTR_1g111830 Medicago truncatula MTR_1g111830 I 0.681
Pm017050 Prunus mume Pm017050 I 0.666
PRUPE_ppa010926mg Prunus persica PRUPE_ppa010926mg I 0.666
scaffold_600421.1 Arabidopsis lyrata scaffold_600421.1 I 0.816
Thhalv10014613m.g Eutrema salsugineum Thhalv10014613m.g I 0.757
VIT_06s0080g00790 Vitis vinifera VIT_06s0080g00790 I 0.686