CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

OBART01G28260 *(Oryza barthii)* Myb/SANT
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00249 (Myb_DNA-binding)	IPR014778	OBART01G28260	T275441_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
OS01G0708000 M02326_2.00	Oryza sativa	WRMCCTAVNN	NNBTAGGKYW	PBM Weirauch et al.(2014) pTH8716	0.909	1.000
AT1G72740 M07033_2.00	Arabidopsis thaliana	HMNAAACCCTAAWYY	RRWTTAGGGTTTNKD	Dap-seq OMalley et al.(2016) AT1G72740_col_a	0.804	0.766
AT1G72740 M07034_2.00	Arabidopsis thaliana	HNWAACCCTAAHYHNNNHNNN	NNNDNNNDRDTTAGGGTTWND	Dap-seq OMalley et al.(2016) AT1G72740_colamp_a	0.804	0.766
TRB1 M01070_2.00	Arabidopsis thaliana	WRMCCTAR	YTAGGKYW	PBM Sullivan et al.(2014) pTH7117	0.761	0.787
TRB2 M02314_2.00	Arabidopsis thaliana	WRMCCTAR	YTAGGKYW	PBM Weirauch et al.(2014) pTH7094	0.665	0.766
TRB2 M01083_2.00	Arabidopsis thaliana	HRMCCTAR	YTAGGKYD	PBM Sullivan et al.(2014) pTH7260	0.665	0.766
TRB2 M07157_2.00	Arabidopsis thaliana	HHHHHNWWRCCCTAAWHHN	NDDWTTAGGGYWWNDDDDD	Dap-seq OMalley et al.(2016) TBP3_col_a	0.665	0.766
TRB2 M07158_2.00	Arabidopsis thaliana	HVDHHHNWARCCCTAAHYH	DRDTTAGGGYTWNDDDHBD	Dap-seq OMalley et al.(2016) TBP3_colamp_a	0.665	0.766
PK06103.1 M02348_2.00	Cannabis sativa	TGCCCTAG	CTAGGGCA	PBM Weirauch et al.(2014) pTH9649	0.664	0.745
For this family, TFs with SR scores > 0.661* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
OBART01G28260.1	Myb	5	57	KQKWTSEEEEALRRGVLKHGPGKWRTIQKDPEFSPVLSSRSNIDLKDKWRNLS

Links
Other Myb/SANT family TFs
Other *Oryza barthii* TFs

210 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
ANCCEY_05608	Ancylostoma ceylanicum	ANCCEY_05608	N
ANCDUO_02759	Ancylostoma duodenale	ANCDUO_02759	N
DICVIV_03696	Dictyocaulus viviparus	DICVIV_03696	N
HCOI00669800	Haemonchus contortus	HCOI00669800	N
HCOI01493400	Haemonchus contortus	HCOI01493400	N
NBR_0000283601	Nippostrongylus brasiliensis	NBR_0000283601	N
NBR_0000384001	Nippostrongylus brasiliensis	NBR_0000384001	N