OMERI02G27110 (Oryza meridionalis)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 OMERI02G27110 T276048_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK02532.1
M02347_2.00 		Cannabis sativa
WAATATCTN
NAGATATTW		 PBM
Weirauch et al.(2014)
pTH9579 		0.909 0.978
RVE8
M01074_2.00 		Arabidopsis thaliana
NNNRWATCNN
NNGATWYNNN		 PBM
Sullivan et al.(2014)
pTH7136 		0.901 0.957
RVE8
M07069_2.00 		Arabidopsis thaliana
NHNWAAATATCT
AGATATTTWNDN		 Dap-seq
OMalley et al.(2016)
At3g09600_col_a 		0.901 0.957
RVE8
M07070_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
At3g09600_colamp_a 		0.901 0.957
RVE4
M07117_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
LCL1_colamp_a 		0.901 0.957
RVE4
M07118_2.00 		Arabidopsis thaliana
NAAAATATCT
AGATATTTTN		 Dap-seq
OMalley et al.(2016)
LCL1_col 		0.901 0.957
RVE6
M01081_2.00 		Arabidopsis thaliana
AATATCTD
HAGATATT		 PBM
Sullivan et al.(2014)
pTH7151 		0.899 0.957
RVE6
M07138_2.00 		Arabidopsis thaliana
NNAAAATATCT
AGATATTTTNN		 Dap-seq
OMalley et al.(2016)
At5g52660_col_a 		0.899 0.957
RVE6
M07139_2.00 		Arabidopsis thaliana
NNNWAAATATCT
AGATATTTWNNN		 Dap-seq
OMalley et al.(2016)
At5g52660_colamp_a 		0.899 0.957
mybG
M02319_2.00 		Dictyostelium discoideum
WAATATCT
AGATATTW		 PBM
Weirauch et al.(2014)
pTH5362 		0.818 0.870
RVE5
M01079_2.00 		Arabidopsis thaliana
NWAATATCHN
NDGATATTWN		 PBM
Sullivan et al.(2014)
pTH7138 		0.803 0.913
RVE5
M07100_2.00 		Arabidopsis thaliana
NNAAAATATCT
AGATATTTTNN		 Dap-seq
OMalley et al.(2016)
At4g01280_col_a 		0.803 0.913
RVE5
M07101_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
At4g01280_colamp_a 		0.803 0.913
PK08316.1
M02350_2.00 		Cannabis sativa
NNNRWATCNN
NNGATWYNNN		 PBM
Weirauch et al.(2014)
pTH9488 		0.706 0.696
RVE1
M00879_2.00 		Arabidopsis thaliana
AAATATCT
AGATATTT		 PBM
Franco-Zorrilla et al.(2014)
RVE1 		0.670 0.652
RVE1
M07128_2.00 		Arabidopsis thaliana
NNNWAAATATCTNN
NNAGATATTTWNNN		 Dap-seq
OMalley et al.(2016)
RVE1_col_a 		0.670 0.652
RVE1
M07129_2.00 		Arabidopsis thaliana
NNWAATATCW
WGATATTWNN		 Dap-seq
OMalley et al.(2016)
RVE1_colamp_a 		0.670 0.652
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
OMERI02G27110.1 Myb 37 82
OMERI02G27110.2 Myb 37 82
OMERI02G27110.3 Myb 37 82
OMERI02G27110.4 Myb 37 82

Links

Other Myb/SANT family TFs
Other Oryza meridionalis TFs

335 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BGIOSGA035741 Oryza indica BGIOSGA035741 N 0.000
BGIOSGA035742 Oryza indica BGIOSGA035742 N 0.000
BRADI2G52227 Brachypodium distachyon BRADI2G52227 N 0.000
BRADI4G09180 Brachypodium distachyon BRADI4G09180 N 0.000
BRADI4G09197 Brachypodium distachyon BRADI4G09197 N 0.000
F775_17625 Aegilops tauschii F775_17625 N 0.000
GRMZM2G163427 Zea mays GRMZM2G163427 N 0.000
GRMZM5G868355 Zea mays GRMZM5G868355 N 0.000
LPERR11G20420 Leersia perrieri LPERR11G20420 N 0.000
MLOC_74705 Hordeum vulgare MLOC_74705 N 0.000
OB11G28090 Oryza brachyantha OB11G28090 N 0.000
OBART11G23670 Oryza barthii OBART11G23670 N 0.000
ONIVA11G23190 Oryza nivara ONIVA11G23190 N 0.000
ORGLA11G0190200 Oryza glaberrima ORGLA11G0190200 N 0.000
ORGLA11G0190300 Oryza glaberrima ORGLA11G0190300 N 0.000
ORUFI11G25540 Oryza rufipogon ORUFI11G25540 N 0.000
ORUFI11G25550 Oryza rufipogon ORUFI11G25550 N 0.000
OS11G0705200 Oryza sativa OS11G0705200 N 0.000
Pavir.Ha00317 Panicum virgatum Pavir.Ha00317 N 0.000
Pavir.J28748 Panicum virgatum Pavir.J28748 N 0.000
Sb05g027740 Sorghum bicolor Sb05g027740 N 0.000
Si025985m.g Setaria italica Si025985m.g N 0.000
TRAES3BF026400020CFD_g Triticum aestivum TRAES3BF026400020CFD_g N 0.000
Traes_4AL_FF199F127 Triticum aestivum Traes_4AL_FF199F127 N 0.000
Traes_4BS_A79538646 Triticum aestivum Traes_4BS_A79538646 N 0.000
Traes_4DS_050789E2A Triticum aestivum Traes_4DS_050789E2A N 0.000
Traes_4DS_C7C37A73D Triticum aestivum Traes_4DS_C7C37A73D N 0.000
Traes_4DS_F8FC0C699 Triticum aestivum Traes_4DS_F8FC0C699 N 0.000
Traes_5AL_1A7387EDC Triticum aestivum Traes_5AL_1A7387EDC N 0.000
Traes_5DL_E275797CE Triticum aestivum Traes_5DL_E275797CE N 0.000
TRIUR3_21532 Triticum urartu TRIUR3_21532 N 0.000