POPTR_0015s08880 (Populus trichocarpa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 POPTR_0015s08880 T278477_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB98
M02301_2.00 		Arabidopsis thaliana
NNGTAACGKMN
NKMCGTTACNN		 PBM
Weirauch et al.(2014)
pTH8148 		0.713 0.817
MYB98
M07108_2.00 		Arabidopsis thaliana
DWWWHGTAACGKWHD
HDWMCGTTACDWWWH		 Dap-seq
OMalley et al.(2016)
MYB98_col_a 		0.713 0.817
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0015s08880.1 Myb 189 235
POPTR_0015s08880.1 Myb 241 286

Links

Other Myb/SANT family TFs
Other Populus trichocarpa TFs

130 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo00285s360 Brassica oleracea Bo00285s360 I
Bo3g065910 Brassica oleracea Bo3g065910 I
Bostr.0556s0333 Boechera stricta Bostr.0556s0333 I
Bra025217 Brassica rapa Bra025217 I
Bra032938 Brassica rapa Bra032938 I
Cagra.3598s0013 Capsella grandiflora Cagra.3598s0013 I
Carubv10018979m.g Capsella rubella Carubv10018979m.g I
evm.TU.supercontig_1.335 Carica papaya evm.TU.supercontig_1.335 I
evm.TU.supercontig_1.339 Carica papaya evm.TU.supercontig_1.339 I
evm.TU.supercontig_50.154 Carica papaya evm.TU.supercontig_50.154 N
LBD23 Arabidopsis thaliana AT3G26620 D
LBD24 Arabidopsis thaliana AT3G26660 I
scaffold_500562.1 Arabidopsis lyrata scaffold_500562.1 I
Thhalv10005497m.g Eutrema salsugineum Thhalv10005497m.g I
Thhalv10015971m.g Eutrema salsugineum Thhalv10015971m.g I