POPTR_0018s07040 (Populus trichocarpa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 POPTR_0018s07040 T278523_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
OS01G0708000
M02326_2.00 		Oryza sativa
WRMCCTAVNN
NNBTAGGKYW		 PBM
Weirauch et al.(2014)
pTH8716 		0.749 0.787
AT1G72740
M07033_2.00 		Arabidopsis thaliana
HMNAAACCCTAAWYY
RRWTTAGGGTTTNKD		 Dap-seq
OMalley et al.(2016)
AT1G72740_col_a 		0.731 0.787
AT1G72740
M07034_2.00 		Arabidopsis thaliana
HNWAACCCTAAHYHNNNHNNN
NNNDNNNDRDTTAGGGTTWND		 Dap-seq
OMalley et al.(2016)
AT1G72740_colamp_a 		0.731 0.787
TRB2
M02314_2.00 		Arabidopsis thaliana
WRMCCTAR
YTAGGKYW		 PBM
Weirauch et al.(2014)
pTH7094 		0.720 0.702
TRB2
M01083_2.00 		Arabidopsis thaliana
HRMCCTAR
YTAGGKYD		 PBM
Sullivan et al.(2014)
pTH7260 		0.720 0.702
TRB2
M07157_2.00 		Arabidopsis thaliana
HHHHHNWWRCCCTAAWHHN
NDDWTTAGGGYWWNDDDDD		 Dap-seq
OMalley et al.(2016)
TBP3_col_a 		0.720 0.702
TRB2
M07158_2.00 		Arabidopsis thaliana
HVDHHHNWARCCCTAAHYH
DRDTTAGGGYTWNDDDHBD		 Dap-seq
OMalley et al.(2016)
TBP3_colamp_a 		0.720 0.702
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0018s07040.1 Myb 5 57

Links

Other Myb/SANT family TFs
Other Populus trichocarpa TFs

153 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
10438_YHL009C Saccharomyces paradoxus 10438_YHL009C I 0.000
23273_YHL009C Saccharomyces bayanus 23273_YHL009C I 0.000
9588_YHL009C Saccharomyces mikatae 9588_YHL009C I 0.000
A1O1_05481 Capronia coronata A1O1_05481 I 0.000
A1O7_06866 Cladophialophora yegresii A1O7_06866 I 0.000
AOL_s00079g257 Arthrobotrys oligospora AOL_s00079g257 I 0.000
ATEG_06925 Aspergillus terreus CADATEAG00003197 I 0.000
AWRI1499_1265 Brettanomyces bruxellensis AWRI1499_1265 N 0.000
BN7_4345 Wickerhamomyces ciferrii BN7_4345 I 0.000
CADAFLAG00007235 Aspergillus flavus CADAFLAG00007235 I 0.000
CADANGAG00005877 Aspergillus niger CADANGAG00005877 I 0.000
CAGL0K02585g Candida glabrata CAGL0K02585g I 0.000
CAGL0M10087g Candida glabrata CAGL0M10087g I 0.000
CANTEDRAFT_114901 Candida tenuis CANTEDRAFT_114901 I 0.000
CaO19.10704 Candida albicans CaO19.10704 I 0.000
CaO19.3193 Candida albicans CaO19.3193 I 0.000
CD36_51520 Candida dubliniensis CD36_51520 I 0.000
CORT_0E05690 Candida orthopsilosis CORT_0E05690 I 0.000
CTRG_05304 Candida tropicalis CTRG_05304 I 0.000
DEHA2E11616g Debaryomyces hansenii DEHA2E11616g I 0.000
e_gw1.00771.352.1 Aspergillus carbonarius e_gw1.00771.352.1 I 0.000
fgeneshMC_pg.2_#_504 Mucor circinelloides fgeneshMC_pg.2_#_504 I 0.000
G210_3388 Candida maltosa G210_3388 I 0.000
H072_3382 Dactylellina haptotyla H072_3382 I 0.000
HMPREF1120_07473 Exophiala dermatitidis HMPREF1120_07473 I 0.000
HPODL_01491 Ogataea parapolymorpha HPODL_01491 N 0.000
KLTH0D05918g Lachancea thermotolerans KLTH0D05918g I 0.000
KLTH0D05918g Kluyveromyces thermotolerans KLTH0D05918g I 0.000
KNAG_0C05680 Kazachstania naganishii KNAG_0C05680 I 0.000
Kwal_7848 Kluyveromyces waltii Kwal_7848 N 0.000
LALA0_S02e02388g Lachancea lanzarotensis LALA0_S02e02388g N 0.000
LELG_03758 Lodderomyces elongisporus LELG_03758 N 0.000
NCAS_0A12530 Naumovozyma castellii NCAS_0A12530 I 0.000
Pc12g16510 Penicillium chrysogenum Pc12g16510 I 0.000
Pc18g00030 Penicillium chrysogenum Pc18g00030 I 0.000
PCH_Pc12g16510 Penicillium rubens PCH_Pc12g16510 I 0.000
PCH_Pc18g00030 Penicillium rubens PCH_Pc18g00030 I 0.000
PDIP_75650 Penicillium digitatum PDIP_75650 I 0.000
PEX1_067480 Penicillium expansum PEX1_067480 I 0.000
PGUG_03388 Candida guilliermondii PGUG_03388 I 0.000
PGUG_03388 Meyerozyma guilliermondii PGUG_03388 I 0.000
PV11_09617 Exophiala sideris PV11_09617 I 0.000
SAKL0E02420g Lachancea kluyveri SAKL0E02420g I 0.000
Scas_Contig673.3 Saccharomyces castellii Scas_Contig673.3 I 0.000
SKUD_203408 Saccharomyces kudriavzevii SKUD_203408 I 0.000
SPAPADRAFT_61100 Spathaspora passalidarum SPAPADRAFT_61100 N 0.000
TBLA_0I00300 Tetrapisispora blattae TBLA_0I00300 I 0.000
U727_00433932361 Penicillium solitum U727_00433932361 I 0.000
YALI0_D09757g Yarrowia lipolytica YALI0_D09757g N 0.000
YAP3 Saccharomyces cerevisiae YHL009C D 0.000