Solyc09g008390.1 (Solanum lycopersicum)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 Solyc09g008390.1 T280226_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB27
M07097_2.00 		Arabidopsis thaliana
HHTACCTAAYTTWWN
NWWAARTTAGGTADD		 Dap-seq
OMalley et al.(2016)
MYB27_col_a 		0.690 0.710
MYB27
M07098_2.00 		Arabidopsis thaliana
NYHTACCTAAYTTWHN
NDWAARTTAGGTADRN		 Dap-seq
OMalley et al.(2016)
MYB27_colamp_a 		0.690 0.710
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Solyc09g008390.1.1 Myb 17 64
Solyc09g008390.1.1 Myb 70 115

Links

Other Myb/SANT family TFs
Other Solanum lycopersicum TFs

14 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s01267p00006490 Amborella trichopoda AMTR_s01267p00006490 I 0.671
Aquca_030_00038 Aquilegia coerulea Aquca_030_00038 I 0.677
AtMYB27 Arabidopsis lyrata fgenesh2_kg.5__1687__AT3G53200.1 I 0.667
Bostr.9544s0002 Boechera stricta Bostr.9544s0002 I 0.668
Cagra.0612s0043 Capsella grandiflora Cagra.0612s0043 I 0.668
Carubv10019409m.g Capsella rubella Carubv10019409m.g I 0.668
evm.TU.supercontig_92.99 Carica papaya evm.TU.supercontig_92.99 I 0.685
GLYMA10G06680 Glycine max GLYMA10G06680 N 0.704
GLYMA13G20880 Glycine max GLYMA13G20880 N 0.664
Gorai.004G145800 Gossypium raimondii Gorai.004G145800 I 0.664
MTR_1g062940 Medicago truncatula MTR_1g062940 N 0.691
MYB27 Arabidopsis thaliana AT3G53200 D 0.690
PGSC0003DMG400028282 Solanum tuberosum PGSC0003DMG400028282 N 0.748
Solyc10g083900.1 Solanum lycopersicum Solyc10g083900.1 N 0.748