cassava36811.valid.m1 (Manihot esculenta)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 cassava36811.valid.m1 T284234_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK02532.1
M02347_2.00 		Cannabis sativa
WAATATCTN
NAGATATTW		 PBM
Weirauch et al.(2014)
pTH9579 		0.909 0.978
RVE8
M01074_2.00 		Arabidopsis thaliana
NNNRWATCNN
NNGATWYNNN		 PBM
Sullivan et al.(2014)
pTH7136 		0.901 0.957
RVE8
M07069_2.00 		Arabidopsis thaliana
NHNWAAATATCT
AGATATTTWNDN		 Dap-seq
OMalley et al.(2016)
At3g09600_col_a 		0.901 0.957
RVE8
M07070_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
At3g09600_colamp_a 		0.901 0.957
RVE4
M07117_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
LCL1_colamp_a 		0.901 0.957
RVE4
M07118_2.00 		Arabidopsis thaliana
NAAAATATCT
AGATATTTTN		 Dap-seq
OMalley et al.(2016)
LCL1_col 		0.901 0.957
RVE6
M01081_2.00 		Arabidopsis thaliana
AATATCTD
HAGATATT		 PBM
Sullivan et al.(2014)
pTH7151 		0.899 0.957
RVE6
M07138_2.00 		Arabidopsis thaliana
NNAAAATATCT
AGATATTTTNN		 Dap-seq
OMalley et al.(2016)
At5g52660_col_a 		0.899 0.957
RVE6
M07139_2.00 		Arabidopsis thaliana
NNNWAAATATCT
AGATATTTWNNN		 Dap-seq
OMalley et al.(2016)
At5g52660_colamp_a 		0.899 0.957
mybG
M02319_2.00 		Dictyostelium discoideum
WAATATCT
AGATATTW		 PBM
Weirauch et al.(2014)
pTH5362 		0.818 0.870
RVE5
M01079_2.00 		Arabidopsis thaliana
NWAATATCHN
NDGATATTWN		 PBM
Sullivan et al.(2014)
pTH7138 		0.803 0.913
RVE5
M07100_2.00 		Arabidopsis thaliana
NNAAAATATCT
AGATATTTTNN		 Dap-seq
OMalley et al.(2016)
At4g01280_col_a 		0.803 0.913
RVE5
M07101_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
At4g01280_colamp_a 		0.803 0.913
PK08316.1
M02350_2.00 		Cannabis sativa
NNNRWATCNN
NNGATWYNNN		 PBM
Weirauch et al.(2014)
pTH9488 		0.706 0.696
RVE1
M00879_2.00 		Arabidopsis thaliana
AAATATCT
AGATATTT		 PBM
Franco-Zorrilla et al.(2014)
RVE1 		0.670 0.652
RVE1
M07128_2.00 		Arabidopsis thaliana
NNNWAAATATCTNN
NNAGATATTTWNNN		 Dap-seq
OMalley et al.(2016)
RVE1_col_a 		0.670 0.652
RVE1
M07129_2.00 		Arabidopsis thaliana
NNWAATATCW
WGATATTWNN		 Dap-seq
OMalley et al.(2016)
RVE1_colamp_a 		0.670 0.652
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava36811.valid.m1 Myb 82 127

Links

Other Myb/SANT family TFs
Other Manihot esculenta TFs

334 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Alligator_sinensis_CCG014139.1 Alligator sinensis Alligator_sinensis_CCG014139.1 N
Cmyd_10005165 Chelonia mydas Cmyd_10005165 N
ENSCSAG00000008746 Chlorocebus sabaeus ENSCSAG00000008746 N
ENSMPUG00000012814 Mustela putorius furo ENSMPUG00000012814 N
ENSOARG00000010061 Ovis aries ENSOARG00000010061 N
ENSPPYG00000011732 Pongo abelii ENSPPYG00000011732 I
ENSPSIG00000011562 Pelodiscus sinensis ENSPSIG00000011562 I
Ogr03452 Ophisaurus gracilis Ogr03452 N
PATZ1 Macaca mulatta ENSMMUG00000013911 I
Patz1 Mus musculus ENSMUSG00000020453 I
PATZ1 Myotis lucifugus ENSMLUG00000009942 I
PATZ1 Oryctolagus cuniculus ENSOCUG00000002323 N
PATZ1 Ochotona princeps ENSOPRG00000002286 N
PATZ1 Homo sapiens ENSG00000100105 D
PATZ1 Felis catus ENSFCAG00000030253 N
Patz1 Rattus norvegicus ENSRNOG00000018709 N
PATZ1 Sus scrofa ENSSSCG00000010027 N
PATZ1 Taeniopygia guttata ENSTGUG00000009749 N
PATZ1 Equus caballus ENSECAG00000025030 N
PATZ1 Callithrix jacchus ENSCJAG00000010978 N
PATZ1 Canis familiaris ENSCAFG00000013087 I