e_gwh1.5.1.153.1 (Pichia stipitis)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 e_gwh1.5.1.153.1 T284661_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
orf19.801
M11058_2.00 		Candida albicans Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$TBF1CA_01 		0.804 0.870
TBF1
M00065_2.00 		Saccharomyces cerevisiae
ARCCCTAN
NTAGGGYT		 PBM
Badis et al.(2008)
TBF1_2078 		0.686 0.674
TBF1
M01562_2.00 		Saccharomyces cerevisiae
NNWRCCCTRN
NYAGGGYWNN		 PBM
Zhu et al.(2009)
Tbf1 		0.686 0.674
TBF1
M07492_2.00 		Saccharomyces cerevisiae
WRCCCTAN
NTAGGGYW		 PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0403.1 		0.686 0.674
TBF1
M08597_2.00 		Saccharomyces cerevisiae
DHYYAACCCTANBSV
BSVNTAGGGTTRRDH		 Misc
DeBoer et al.(2011)
YPL128C_770 		0.686 0.674
TBF1
M11065_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$TBF1_02 		0.686 0.674
TBF1
M11066_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$TBF1_03 		0.686 0.674
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
e_gwh1.5.1.153.1 Myb 529 584

Links

Other Myb/SANT family TFs
Other Pichia stipitis TFs

41 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29598.m000464 Ricinus communis 29598.m000464 N
29883.m001988 Ricinus communis 29883.m001988 N
Aquca_017_00590 Aquilegia coerulea Aquca_017_00590 N
AT1G03040 Arabidopsis thaliana AT1G03040 N
Bo01031s030 Brassica oleracea Bo01031s030 N
Bo2g100750 Brassica oleracea Bo2g100750 N
Bo5g003580 Brassica oleracea Bo5g003580 N
Bo9g005930 Brassica oleracea Bo9g005930 N
Bostr.2983s0202 Boechera stricta Bostr.2983s0202 N
Bra000872 Brassica rapa Bra000872 N
Bra018539 Brassica rapa Bra018539 N
Bra033368 Brassica rapa Bra033368 N
Bra036256 Brassica rapa Bra036256 N
Cagra.0635s0023 Capsella grandiflora Cagra.0635s0023 N
Cagra.0897s0074 Capsella grandiflora Cagra.0897s0074 N
Carubv10001523m.g Capsella rubella Carubv10001523m.g N
Carubv10009831m.g Capsella rubella Carubv10009831m.g N
cassava18573.valid.m1 Manihot esculenta cassava18573.valid.m1 N
cassava22704.valid.m1 Manihot esculenta cassava22704.valid.m1 N
cassava36725.valid.m1 Manihot esculenta cassava36725.valid.m1 N
Ca_03755 Cicer arietinum Ca_03755 N
Ca_07790 Cicer arietinum Ca_07790 N
Ca_12194 Cicer arietinum Ca_12194 N
chr1.CM0375.380.nc Lotus japonicus chr1.CM0375.380.nc N
Ciclev10021443m.g Citrus clementina Ciclev10021443m.g N
Cla011475 Citrullus lanatus Cla011475 N
Cla015040 Citrullus lanatus Cla015040 N
Cucsa.289090 Cucumis sativus Cucsa.289090 N
Cucsa.388780 Cucumis sativus Cucsa.388780 N
Eucgr.B01487 Eucalyptus grandis Eucgr.B01487 N
Eucgr.H04337 Eucalyptus grandis Eucgr.H04337 N
evm.TU.supercontig_117.94 Carica papaya evm.TU.supercontig_117.94 N
fgenesh2_kg.1__235__AT1G03040.1 Arabidopsis lyrata fgenesh2_kg.1__235__AT1G03040.1 N
gene16564-v1.0-hybrid Fragaria vesca gene16564-v1.0-hybrid N
GLYMA02G16110 Glycine max GLYMA02G16110 N
GLYMA03G31510 Glycine max GLYMA03G31510 N
GLYMA10G03690 Glycine max GLYMA10G03690 N
GLYMA10G30430 Glycine max GLYMA10G30430 N
GLYMA19G34360 Glycine max GLYMA19G34360 N
GLYMA20G36770 Glycine max GLYMA20G36770 N
Gorai.001G242500 Gossypium raimondii Gorai.001G242500 N
Gorai.007G141800 Gossypium raimondii Gorai.007G141800 N
Gorai.007G277200 Gossypium raimondii Gorai.007G277200 N
Lus10006587.g Linum usitatissimum Lus10006587.g N
Lus10015909.g Linum usitatissimum Lus10015909.g N
MDP0000295593 Malus domestica MDP0000295593 N
MTR_1g070870 Medicago truncatula MTR_1g070870 N
MTR_1g080890 Medicago truncatula MTR_1g080890 N
orange1.1g022649m.g Citrus sinensis orange1.1g022649m.g N
PK20184.1 Cannabis sativa PK20184.1 N
PK25419.1 Cannabis sativa PK25419.1 N
Pm003525 Prunus mume Pm003525 N
POPTR_0002s04620 Populus trichocarpa POPTR_0002s04620 N
PRUPE_ppa008172mg Prunus persica PRUPE_ppa008172mg N
SapurV1A.0006s1290 Salix purpurea SapurV1A.0006s1290 N
SapurV1A.0110s0180 Salix purpurea SapurV1A.0110s0180 N
SapurV1A.0729s0150 Salix purpurea SapurV1A.0729s0150 N
TCM_004217 Theobroma cacao TCM_004217 N
TCM_026346 Theobroma cacao TCM_026346 N
Thhalv10008279m.g Eutrema salsugineum Thhalv10008279m.g N
Thhalv10028824m.g Eutrema salsugineum Thhalv10028824m.g N
UNE12 Arabidopsis thaliana AT4G02590 N
UNE12 Arabidopsis lyrata fgenesh2_kg.6__3435__AT4G02590.2 N
VIT_05s0020g04620 Vitis vinifera VIT_05s0020g04620 N
VIT_07s0141g00220 Vitis vinifera VIT_07s0141g00220 N
VIT_14s0030g02230 Vitis vinifera VIT_14s0030g02230 N