Pavir.Da00077 (Panicum virgatum)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Pavir.Da00077 T289077_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Gam1
M02703_2.00 		Hordeum vulgare
NVYAACSGMC
GKCSGTTRBN		 SELEX
Mathelier et al.(2014)
MA0034.1 		0.680 0.753
Gam1
M11061_2.00 		Hordeum vulgare
YAACSRHM
KDYSGTTR		 Transfac
Matys et al.(2006)
P$GAMYB_01 		0.680 0.753
GAM1_ORYSI
M11055_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$GAMYB_Q2 		0.663 0.742
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Da00077.1.p Myb 16 63
Pavir.Da00077.1.p Myb 69 114

Links

Other Myb/SANT family TFs
Other Panicum virgatum TFs

141 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29729.m002369 Ricinus communis 29729.m002369 I
29915.m000479 Ricinus communis 29915.m000479 I
30169.m006533 Ricinus communis 30169.m006533 I
30174.m008651 Ricinus communis 30174.m008651 I
AMTR_s00077p00103880 Amborella trichopoda AMTR_s00077p00103880 I
Aquca_013_00135 Aquilegia coerulea Aquca_013_00135 I
Aquca_027_00037 Aquilegia coerulea Aquca_027_00037 I
Aquca_030_00182 Aquilegia coerulea Aquca_030_00182 I
BGIOSGA012571 Oryza indica BGIOSGA012571 I
Bo00913s010 Brassica oleracea Bo00913s010 I
Bo3g035130 Brassica oleracea Bo3g035130 I
Bo3g035140 Brassica oleracea Bo3g035140 I
Bo4g012750 Brassica oleracea Bo4g012750 I
Bo4g190380 Brassica oleracea Bo4g190380 I
Bo4g190390 Brassica oleracea Bo4g190390 I
Bo6g071110 Brassica oleracea Bo6g071110 I
Bo8g090820 Brassica oleracea Bo8g090820 I
Bostr.20505s0112 Boechera stricta Bostr.20505s0112 I
Bostr.9345s0060 Boechera stricta Bostr.9345s0060 I
Bostr.9345s0061 Boechera stricta Bostr.9345s0061 I
Bra000202 Brassica rapa Bra000202 I
Bra000203 Brassica rapa Bra000203 I
Bra003239 Brassica rapa Bra003239 I
Bra004586 Brassica rapa Bra004586 I
Bra007243 Brassica rapa Bra007243 I
Bra014692 Brassica rapa Bra014692 I
Bra016974 Brassica rapa Bra016974 I
Bra016975 Brassica rapa Bra016975 I
BRADI4G44370 Brachypodium distachyon BRADI4G44370 N
Cagra.0925s0056 Capsella grandiflora Cagra.0925s0056 I
Cagra.1642s0038 Capsella grandiflora Cagra.1642s0038 I
Cagra.1642s0039 Capsella grandiflora Cagra.1642s0039 I
Carubv10017349m.g Capsella rubella Carubv10017349m.g I
Carubv10023773m.g Capsella rubella Carubv10023773m.g I
Carubv10024972m.g Capsella rubella Carubv10024972m.g I
cassava23183.valid.m1 Manihot esculenta cassava23183.valid.m1 I
cassava25180.valid.m1 Manihot esculenta cassava25180.valid.m1 I
cassava36286.valid.m1 Manihot esculenta cassava36286.valid.m1 I
cassava36814.valid.m1 Manihot esculenta cassava36814.valid.m1 I
cassava36815.valid.m1 Manihot esculenta cassava36815.valid.m1 I
cassava43790.valid.m1 Manihot esculenta cassava43790.valid.m1 I
cassava7221.valid.m1 Manihot esculenta cassava7221.valid.m1 I
cassava7524.valid.m1 Manihot esculenta cassava7524.valid.m1 I
cassava7525.valid.m1 Manihot esculenta cassava7525.valid.m1 I
Ca_04100 Cicer arietinum Ca_04100 I
Ca_09495 Cicer arietinum Ca_09495 I
Ca_12915 Cicer arietinum Ca_12915 I
Ca_18932 Cicer arietinum Ca_18932 I
chr1.CM0320.400.nd Lotus japonicus chr1.CM0320.400.nd I
Ciclev10012055m.g Citrus clementina Ciclev10012055m.g I
Ciclev10032192m.g Citrus clementina Ciclev10032192m.g I
Ciclev10033384m.g Citrus clementina Ciclev10033384m.g I
Cla007424 Citrullus lanatus Cla007424 I
Cla015244 Citrullus lanatus Cla015244 I
Cla018337 Citrullus lanatus Cla018337 I
Cucsa.078810 Cucumis sativus Cucsa.078810 I
Cucsa.177060 Cucumis sativus Cucsa.177060 I
Eucgr.D02359 Eucalyptus grandis Eucgr.D02359 I
Eucgr.G03144 Eucalyptus grandis Eucgr.G03144 I
Eucgr.G03145 Eucalyptus grandis Eucgr.G03145 I
Eucgr.J00106 Eucalyptus grandis Eucgr.J00106 I
Eucgr.K01289 Eucalyptus grandis Eucgr.K01289 I
evm.TU.contig_32256 Carica papaya evm.TU.contig_32256 I
evm.TU.supercontig_19.44 Carica papaya evm.TU.supercontig_19.44 I
evm.TU.supercontig_86.64 Carica papaya evm.TU.supercontig_86.64 I
evm.TU.supercontig_86.65 Carica papaya evm.TU.supercontig_86.65 I
gene13546-v1.0-hybrid Fragaria vesca gene13546-v1.0-hybrid I
gene13547-v1.0-hybrid Fragaria vesca gene13547-v1.0-hybrid I
gene13549-v1.0-hybrid Fragaria vesca gene13549-v1.0-hybrid I
gene13554-v1.0-hybrid Fragaria vesca gene13554-v1.0-hybrid I
gene21365-v1.0-hybrid Fragaria vesca gene21365-v1.0-hybrid I
GLYMA03G00460 Glycine max GLYMA03G00460 I
GLYMA04G40130 Glycine max GLYMA04G40130 I
GLYMA05G29921 Glycine max GLYMA05G29921 I
GLYMA06G14720 Glycine max GLYMA06G14720 I
GLYMA09G41050 Glycine max GLYMA09G41050 I
GLYMA13G34240 Glycine max GLYMA13G34240 I
GLYMA13G34251 Glycine max GLYMA13G34251 I
GLYMA13G34281 Glycine max GLYMA13G34281 I
GLYMA14G36430 Glycine max GLYMA14G36430 I
GLYMA14G36438 Glycine max GLYMA14G36438 I
GLYMA14G36446 Glycine max GLYMA14G36446 I
GLYMA16G34590 Glycine max GLYMA16G34590 I
GLYMA18G44560 Glycine max GLYMA18G44560 I
GLYMA19G44380 Glycine max GLYMA19G44380 I
Gorai.001G155800 Gossypium raimondii Gorai.001G155800 I
Gorai.005G003900 Gossypium raimondii Gorai.005G003900 I
Gorai.007G107300 Gossypium raimondii Gorai.007G107300 I
Gorai.009G292600 Gossypium raimondii Gorai.009G292600 I
Gorai.010G219200 Gossypium raimondii Gorai.010G219200 I
Gorai.013G008300 Gossypium raimondii Gorai.013G008300 I
GRMZM2G025895 Zea mays GRMZM2G025895 I
GRMZM2G061408 Zea mays GRMZM2G061408 I
GSMUA_Achr6G05710_001 Musa acuminata GSMUA_Achr6G05710_001 I
GSMUA_Achr8G01730_001 Musa acuminata GSMUA_Achr8G01730_001 I
GSMUA_Achr8G25110_001 Musa acuminata GSMUA_Achr8G25110_001 I
LPERR03G14340 Leersia perrieri LPERR03G14340 I
Lus10012870.g Linum usitatissimum Lus10012870.g I
Lus10014177.g Linum usitatissimum Lus10014177.g I
Lus10025133.g Linum usitatissimum Lus10025133.g I
Lus10025216.g Linum usitatissimum Lus10025216.g I
Lus10029021.g Linum usitatissimum Lus10029021.g I
Lus10029022.g Linum usitatissimum Lus10029022.g I
Lus10030517.g Linum usitatissimum Lus10030517.g I
Lus10034244.g Linum usitatissimum Lus10034244.g I
MDP0000175240 Malus domestica MDP0000175240 I
MDP0000754989 Malus domestica MDP0000754989 I
MDP0000828055 Malus domestica MDP0000828055 I
mgf002542m Mimulus guttatus mgf002542m I
mgf009193m Mimulus guttatus mgf009193m I
MTR_0002s1250 Medicago truncatula MTR_0002s1250 I
MTR_2g075610 Medicago truncatula MTR_2g075610 I
MTR_2g075680 Medicago truncatula MTR_2g075680 I
MTR_2g075690 Medicago truncatula MTR_2g075690 I
MTR_2g075750 Medicago truncatula MTR_2g075750 I
MTR_3g093830 Medicago truncatula MTR_3g093830 I
MTR_7g073380 Medicago truncatula MTR_7g073380 I
MTR_7g073430 Medicago truncatula MTR_7g073430 I
MTR_8g005750 Medicago truncatula MTR_8g005750 I
MTR_8g027860 Medicago truncatula MTR_8g027860 I
MTR_8g032510 Medicago truncatula MTR_8g032510 N
OBART03G16400 Oryza barthii OBART03G16400 I
OGLUM03G16780 Oryza glumaepatula OGLUM03G16780 I
OLONG_024544 Oryza longistaminata OLONG_024544 I
OMERI03G14670 Oryza meridionalis OMERI03G14670 I
ONIVA03G17390 Oryza nivara ONIVA03G17390 I
orange1.1g018407m.g Citrus sinensis orange1.1g018407m.g I
orange1.1g021598m.g Citrus sinensis orange1.1g021598m.g I
ORUFI03G16960 Oryza rufipogon ORUFI03G16960 I
OS03G0335200 Oryza sativa OS03G0335200 I
Pavir.Cb01173 Panicum virgatum Pavir.Cb01173 I
Pavir.Gb01556 Panicum virgatum Pavir.Gb01556 I
Pavir.Ib01568 Panicum virgatum Pavir.Ib01568 I
Pavir.J05812 Panicum virgatum Pavir.J05812 I
PDK_20s1519811g002 Phoenix dactylifera PDK_20s1519811g002 I
PDK_20s1571901g001 Phoenix dactylifera PDK_20s1571901g001 I
PGSC0003DMG400008391 Solanum tuberosum PGSC0003DMG400008391 I
PGSC0003DMG400020608 Solanum tuberosum PGSC0003DMG400020608 I
PGSC0003DMG400027582 Solanum tuberosum PGSC0003DMG400027582 I
PGSC0003DMG400029207 Solanum tuberosum PGSC0003DMG400029207 I
PK03324.1 Cannabis sativa PK03324.1 I
PK21378.1 Cannabis sativa PK21378.1 I
Pm003013 Prunus mume Pm003013 I
Pm003014 Prunus mume Pm003014 I
Pm003015 Prunus mume Pm003015 I
Pm019286 Prunus mume Pm019286 I
POPTR_0002s17010 Populus trichocarpa POPTR_0002s17010 I
POPTR_0006s10950 Populus trichocarpa POPTR_0006s10950 I
POPTR_0012s01380 Populus trichocarpa POPTR_0012s01380 I
POPTR_0013s09470 Populus trichocarpa POPTR_0013s09470 I
POPTR_0014s09190 Populus trichocarpa POPTR_0014s09190 I
POPTR_0016s14490 Populus trichocarpa POPTR_0016s14490 I
PRUPE_ppa020736mg Prunus persica PRUPE_ppa020736mg I
PRUPE_ppa025912mg Prunus persica PRUPE_ppa025912mg I
PRUPE_ppa026125mg Prunus persica PRUPE_ppa026125mg I
PRUPE_ppa026704mg Prunus persica PRUPE_ppa026704mg I
SapurV1A.0065s0580 Salix purpurea SapurV1A.0065s0580 I
SapurV1A.0190s0060 Salix purpurea SapurV1A.0190s0060 I
SapurV1A.0356s0010 Salix purpurea SapurV1A.0356s0010 I
SapurV1A.0377s0020 Salix purpurea SapurV1A.0377s0020 I
SapurV1A.0914s0120 Salix purpurea SapurV1A.0914s0120 I
SapurV1A.1043s0030 Salix purpurea SapurV1A.1043s0030 I
SapurV1A.2295s0010 Salix purpurea SapurV1A.2295s0010 I
Sb08g005080 Sorghum bicolor Sb08g005080 I
SELMODRAFT_113487 Selaginella moellendorffii SELMODRAFT_113487 I
SELMODRAFT_29692 Selaginella moellendorffii SELMODRAFT_29692 I
Si012735m.g Setaria italica Si012735m.g I
Si022702m.g Setaria italica Si022702m.g I
Si030531m.g Setaria italica Si030531m.g I
Solyc03g095770.2 Solanum lycopersicum Solyc03g095770.2 I
Solyc05g050330.2 Solanum lycopersicum Solyc05g050330.2 I
Solyc09g015770.2 Solanum lycopersicum Solyc09g015770.2 I
TCM_005179 Theobroma cacao TCM_005179 I
TCM_006103 Theobroma cacao TCM_006103 I
TCM_006116 Theobroma cacao TCM_006116 I
TCM_019689 Theobroma cacao TCM_019689 I
TCM_045556 Theobroma cacao TCM_045556 I
Thhalv10006146m.g Eutrema salsugineum Thhalv10006146m.g I
Thhalv10017926m.g Eutrema salsugineum Thhalv10017926m.g I
VIT_08s0058g01390 Vitis vinifera VIT_08s0058g01390 I
VIT_13s0067g03140 Vitis vinifera VIT_13s0067g03140 I
VIT_15s0046g01140 Vitis vinifera VIT_15s0046g01140 I
WRKY55 Arabidopsis thaliana AT2G40740 D
WRKY55 Arabidopsis lyrata fgenesh1_pm.C_scaffold_4001817 I
WRKY70 Arabidopsis thaliana AT3G56400 D
WRKY70 Arabidopsis lyrata fgenesh2_kg.5__2072__AT3G56400.1 I