Pavir.J18859 (Panicum virgatum)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Pavir.J18859 T289397_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J18859.1.p Myb 968 1020

Links

Other Myb/SANT family TFs
Other Panicum virgatum TFs

57 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30204.m001750 Ricinus communis 30204.m001750 N 0.676
BGIOSGA027556 Oryza indica BGIOSGA027556 N 0.798
Bostr.19424s0133 Boechera stricta Bostr.19424s0133 N 0.700
Bostr.2021s0055 Boechera stricta Bostr.2021s0055 N 0.665
BRADI2G14372 Brachypodium distachyon BRADI2G14372 N 0.665
BRADI2G41720 Brachypodium distachyon BRADI2G41720 N 0.716
cassava349.valid.m1 Manihot esculenta cassava349.valid.m1 N 0.689
chr1.LjT36F23.70.nd Lotus japonicus chr1.LjT36F23.70.nd N 0.667
Ciclev10018446m.g Citrus clementina Ciclev10018446m.g N 0.689
Cla015187 Citrullus lanatus Cla015187 N 0.700
Cucsa.078210 Cucumis sativus Cucsa.078210 N 0.700
EAF1A Arabidopsis thaliana AT3G24880 N 0.678
EAF1B Arabidopsis thaliana AT3G24870 N 0.678
Eucgr.H00795 Eucalyptus grandis Eucgr.H00795 N 0.714
evm.TU.supercontig_8.144 Carica papaya evm.TU.supercontig_8.144 N 0.683
F775_03250 Aegilops tauschii F775_03250 N 0.716
fgenesh2_kg.3__2706__AT3G24880.1 Arabidopsis lyrata fgenesh2_kg.3__2706__AT3G24880.1 N 0.700
gene17608-v1.0-hybrid Fragaria vesca gene17608-v1.0-hybrid N 0.689
GLYMA03G18725 Glycine max GLYMA03G18725 N 0.676
GLYMA08G46710 Glycine max GLYMA08G46710 N 0.689
GLYMA16G14060 Glycine max GLYMA16G14060 N 0.676
GLYMA18G36628 Glycine max GLYMA18G36628 N 0.679
Gorai.004G226000 Gossypium raimondii Gorai.004G226000 N 0.716
Gorai.007G155000 Gossypium raimondii Gorai.007G155000 N 0.689
GSMUA_Achr1G21080_001 Musa acuminata GSMUA_Achr1G21080_001 N 0.696
LPERR11G18970 Leersia perrieri LPERR11G18970 N 0.750
MDP0000155726 Malus domestica MDP0000155726 N 0.689
MDP0000250529 Malus domestica MDP0000250529 N 0.689
MTR_7g056603 Medicago truncatula MTR_7g056603 N 0.696
OB01G30180 Oryza brachyantha OB01G30180 N 0.798
OBART08G04660 Oryza barthii OBART08G04660 N 0.798
OGLUM08G04910 Oryza glumaepatula OGLUM08G04910 N 0.798
OLONG_015531 Oryza longistaminata OLONG_015531 N 0.798
OMERI08G04670 Oryza meridionalis OMERI08G04670 N 0.798
ONIVA08G04510 Oryza nivara ONIVA08G04510 N 0.798
OPUNC08G04510 Oryza punctata OPUNC08G04510 N 0.798
orange1.1g000147m.g Citrus sinensis orange1.1g000147m.g N 0.689
ORUFI08G05170 Oryza rufipogon ORUFI08G05170 N 0.798
OS08G0177300 Oryza sativa OS08G0177300 N 0.798
PDK_20s1355591g002 Phoenix dactylifera PDK_20s1355591g002 N 0.665
PK23540.1 Cannabis sativa PK23540.1 N 0.730
Pm020347 Prunus mume Pm020347 N 0.667
POPTR_0002s24490 Populus trichocarpa POPTR_0002s24490 N 0.667
POPTR_0014s19020 Populus trichocarpa POPTR_0014s19020 N 0.675
PRUPE_ppa000065mg Prunus persica PRUPE_ppa000065mg N 0.667
SapurV1A.0135s0340 Salix purpurea SapurV1A.0135s0340 N 0.667
SapurV1A.0342s0100 Salix purpurea SapurV1A.0342s0100 N 0.689
Sb03g025920 Sorghum bicolor Sb03g025920 N 0.909
Si000015m.g Setaria italica Si000015m.g N 0.909
Si020947m.g Setaria italica Si020947m.g N 0.678
Solyc06g083420.1 Solanum lycopersicum Solyc06g083420.1 N 0.748
TCM_002924 Theobroma cacao TCM_002924 N 0.696
Thhalv10002368m.g Eutrema salsugineum Thhalv10002368m.g N 0.679
Traes_3AL_06889C77D Triticum aestivum Traes_3AL_06889C77D N 0.723
Traes_3DL_FC1A52B36 Triticum aestivum Traes_3DL_FC1A52B36 N 0.723
TRIUR3_27363 Triticum urartu TRIUR3_27363 N 0.716
VIT_07s0005g06680 Vitis vinifera VIT_07s0005g06680 N 0.689