LjB09A03.30.nc (Lotus japonicus)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 LjB09A03.30.nc T290924_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK17526.1
M02353_2.00 		Cannabis sativa
NNTTATCCAN
NTGGATAANN		 PBM
Weirauch et al.(2014)
pTH9588 		0.854 0.936
PK23829.1
M02355_2.00 		Cannabis sativa
VTTATCCD
HGGATAAB		 PBM
Weirauch et al.(2014)
pTH9592 		0.843 0.936
fgenesh1_pg.scaffold_70000111
M02342_2.00 		Physcomitrella patens
NNHNATCBN
NVGATNDNN		 PBM
Weirauch et al.(2014)
pTH8492 		0.836 0.915
AT1G74840
M02291_2.00 		Arabidopsis thaliana
NGWTATCCRNN
NNYGGATAWCN		 PBM
Weirauch et al.(2014)
pTH7074 		0.827 0.936
AT1G74840
M07037_2.00 		Arabidopsis thaliana
HHTTATCCAHW
WDTGGATAADD		 Dap-seq
OMalley et al.(2016)
At1g74840_col100_a 		0.827 0.936
AT1G74840
M07038_2.00 		Arabidopsis thaliana
HWNHTTATCCAHWW
WWDTGGATAADNWD		 Dap-seq
OMalley et al.(2016)
At1g74840_colamp_a 		0.827 0.936
AT3G16350
M01078_2.00 		Arabidopsis thaliana
NYTATCYDNN
NNHRGATARN		 PBM
Sullivan et al.(2014)
pTH7149 		0.815 0.851
PK29550.1
M02358_2.00 		Cannabis sativa
NNHDATCYNN
NNRGATHDNN		 PBM
Weirauch et al.(2014)
pTH9595 		0.805 0.830
AT1G19000
M02287_2.00 		Arabidopsis thaliana
NYTATCYDNN
NNHRGATARN		 PBM
Weirauch et al.(2014)
pTH7120 		0.780 0.851
AT1G19000
M07012_2.00 		Arabidopsis thaliana
HDYHTTATCCAHWW
WWDTGGATAADRHD		 Dap-seq
OMalley et al.(2016)
At1g19000_col_a 		0.780 0.851
AT1G19000
M07013_2.00 		Arabidopsis thaliana
WDYNTTATCCAHWW
WWDTGGATAANRHW		 Dap-seq
OMalley et al.(2016)
At1g19000_colamp_a 		0.780 0.851
KUA1
M02312_2.00 		Arabidopsis thaliana
NNTTATCCDN
NHGGATAANN		 PBM
Weirauch et al.(2014)
pTH7647 		0.777 0.851
KUA1
M07136_2.00 		Arabidopsis thaliana
WWHHTTATCCAHWW
WWDTGGATAADDWW		 Dap-seq
OMalley et al.(2016)
At5g47390_colamp_a 		0.777 0.851
KUA1
M07137_2.00 		Arabidopsis thaliana
HHWDYHTTATCCAHW
WDTGGATAADRHWDD		 Dap-seq
OMalley et al.(2016)
At5g47390_col_b 		0.777 0.851
AT5G61620
M07149_2.00 		Arabidopsis thaliana
WWHHTTATCCAHWWN
NWWDTGGATAADDWW		 Dap-seq
OMalley et al.(2016)
AT5G61620_col_a 		0.767 0.809
AT5G61620
M07150_2.00 		Arabidopsis thaliana
YHTTATCCAHW
WDTGGATAADR		 Dap-seq
OMalley et al.(2016)
AT5G61620_colamp_a 		0.767 0.809
0600010132
M02360_2.00 		Ostreococcus tauri
NNVTTATCCDNNN
NNNHGGATAABNN		 PBM
Weirauch et al.(2014)
pTH9441 		0.756 0.851
PK00738.1
M02346_2.00 		Cannabis sativa
NYWATCYDNN
NNHRGATWRN		 PBM
Weirauch et al.(2014)
pTH9487 		0.756 0.830
AT5G56840
M07144_2.00 		Arabidopsis thaliana
WWYMTTATCCAWWWN
NWWWTGGATAAKRWW		 Dap-seq
OMalley et al.(2016)
AT5G56840_col_a 		0.726 0.787
AT5G56840
M07145_2.00 		Arabidopsis thaliana
HHHWWYHTTATCCWHW
WDWGGATAADRWWDDD		 Dap-seq
OMalley et al.(2016)
AT5G56840_colamp_a 		0.726 0.787
AT3G10580
M07072_2.00 		Arabidopsis thaliana
AWBCTTATCYWHWHH
DDWDWRGATAAGVWT		 Dap-seq
OMalley et al.(2016)
AT3G10580_col_a 		0.685 0.638
AT3G10580
M07073_2.00 		Arabidopsis thaliana
CCGAWAAWNTCGGDD
HHCCGANWTTWTCGG		 Dap-seq
OMalley et al.(2016)
AT3G10580_colamp_a 		0.685 0.638
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
LjB09A03.30.nc Myb 74 121

Links

Other Myb/SANT family TFs
Other Lotus japonicus TFs

583 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29842.m003592 Ricinus communis 29842.m003592 N 0.000
29842.m003644 Ricinus communis 29842.m003644 N 0.000
30086.m000210 Ricinus communis 30086.m000210 N 0.000
30169.m006531 Ricinus communis 30169.m006531 N 0.000
AMTR_s00057p00119300 Amborella trichopoda AMTR_s00057p00119300 N 0.000
AMTR_s00147p00088570 Amborella trichopoda AMTR_s00147p00088570 N 0.000
Aquca_012_00145 Aquilegia coerulea Aquca_012_00145 N 0.000
Bostr.5325s0057 Boechera stricta Bostr.5325s0057 N 0.000
Cagra.1968s0081 Capsella grandiflora Cagra.1968s0081 N 0.000
Carubv10011382m.g Capsella rubella Carubv10011382m.g N 0.000
cassava10382.m1 Manihot esculenta cassava10382.m1 N 0.000
cassava11157.m1 Manihot esculenta cassava11157.m1 N 0.000
cassava23225.valid.m1 Manihot esculenta cassava23225.valid.m1 N 0.000
cassava23226.valid.m1 Manihot esculenta cassava23226.valid.m1 N 0.000
cassava24285.valid.m1 Manihot esculenta cassava24285.valid.m1 N 0.000
cassava24286.valid.m1 Manihot esculenta cassava24286.valid.m1 N 0.000
cassava4691.m1 Manihot esculenta cassava4691.m1 N 0.000
Ciclev10017220m.g Citrus clementina Ciclev10017220m.g N 0.000
ETC1 Arabidopsis thaliana AT1G01380 N 0.000
ETC1 Arabidopsis lyrata Al_scaffold_0001_92 N 0.000
Eucgr.A01720 Eucalyptus grandis Eucgr.A01720 N 0.000
Eucgr.D01323 Eucalyptus grandis Eucgr.D01323 N 0.000
Eucgr.K00803 Eucalyptus grandis Eucgr.K00803 N 0.000
evm.TU.contig_29502 Carica papaya evm.TU.contig_29502 N 0.000
gene23919-v1.0-hybrid Fragaria vesca gene23919-v1.0-hybrid N 0.000
gene35171-v1.0-hybrid Fragaria vesca gene35171-v1.0-hybrid N 0.000
GLYMA06G45941 Glycine max GLYMA06G45941 N 0.000
GLYMA12G10790 Glycine max GLYMA12G10790 N 0.000
GLYMA12G32130 Glycine max GLYMA12G32130 N 0.000
Gorai.002G083400 Gossypium raimondii Gorai.002G083400 N 0.000
Gorai.008G172400 Gossypium raimondii Gorai.008G172400 N 0.000
Gorai.010G252300 Gossypium raimondii Gorai.010G252300 N 0.000
Gorai.010G253000 Gossypium raimondii Gorai.010G253000 N 0.000
GSMUA_Achr10G09220_001 Musa acuminata GSMUA_Achr10G09220_001 N 0.000
MDP0000216918 Malus domestica MDP0000216918 N 0.000
MDP0000270078 Malus domestica MDP0000270078 N 0.000
MDP0000387366 Malus domestica MDP0000387366 N 0.000
MDP0000499190 Malus domestica MDP0000499190 N 0.000
mgf009009m Mimulus guttatus mgf009009m N 0.000
MTR_4g046737 Medicago truncatula MTR_4g046737 N 0.000
OPUNC01G23150 Oryza punctata OPUNC01G23150 N 0.000
PDK_20s1307674g001 Phoenix dactylifera PDK_20s1307674g001 N 0.000
PDK_20s1335581g001 Phoenix dactylifera PDK_20s1335581g001 N 0.000
PK11198.1 Cannabis sativa PK11198.1 N 0.000
Pm009748 Prunus mume Pm009748 N 0.000
POPTR_0004s02060 Populus trichocarpa POPTR_0004s02060 N 0.000
POPTR_0007s02510 Populus trichocarpa POPTR_0007s02510 N 0.000
POPTR_0011s00390 Populus trichocarpa POPTR_0011s00390 N 0.000
POPTR_0012s01420 Populus trichocarpa POPTR_0012s01420 N 0.000
POPTR_0015s02310 Populus trichocarpa POPTR_0015s02310 N 0.000
POPTR_0017s06470 Populus trichocarpa POPTR_0017s06470 N 0.000
PRUPE_ppa023926mg Prunus persica PRUPE_ppa023926mg N 0.000
SapurV1A.0345s0340 Salix purpurea SapurV1A.0345s0340 N 0.000
SapurV1A.0346s0010 Salix purpurea SapurV1A.0346s0010 N 0.000
SapurV1A.0377s0050 Salix purpurea SapurV1A.0377s0050 N 0.000
SapurV1A.0610s0050 Salix purpurea SapurV1A.0610s0050 N 0.000
SapurV1A.0722s0160 Salix purpurea SapurV1A.0722s0160 N 0.000
SapurV1A.0779s0100 Salix purpurea SapurV1A.0779s0100 N 0.000
SapurV1A.0928s0060 Salix purpurea SapurV1A.0928s0060 N 0.000
SapurV1A.1106s0040 Salix purpurea SapurV1A.1106s0040 N 0.000
SapurV1A.1227s0050 Salix purpurea SapurV1A.1227s0050 N 0.000
Solyc07g052490.2 Solanum lycopersicum Solyc07g052490.2 N 0.000
TCM_011327 Theobroma cacao TCM_011327 N 0.000
TCM_015351 Theobroma cacao TCM_015351 N 0.000
TCM_030163 Theobroma cacao TCM_030163 N 0.000
TCM_030224 Theobroma cacao TCM_030224 N 0.000
TCM_046858 Theobroma cacao TCM_046858 N 0.000
VIT_10s0116g00500 Vitis vinifera VIT_10s0116g00500 N 0.000
VIT_10s0116g01760 Vitis vinifera VIT_10s0116g01760 N 0.000
VIT_12s0059g02360 Vitis vinifera VIT_12s0059g02360 N 0.000