Bra004385 (Brassica rapa)
NAC/NAM

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02365 (NAM) IPR003441 Bra004385 T292532_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
NAC029
M00973_2.00 		Arabidopsis thaliana
NBACGBMWNN
NNWKVCGTVN		 PBM
Lindemose et al.(2014)
NAP 		0.967 0.973
NAC029
M02369_2.00 		Arabidopsis thaliana
NRGTCAWNN
NNWTGACYN		 PBM
Weirauch et al.(2014)
pTH8397 		0.967 0.973
NAC029
M07180_2.00 		Arabidopsis thaliana
NCGTVHNNNWYACGBMA
TKVCGTRWNNNDBACGN		 Dap-seq
OMalley et al.(2016)
NAP_colamp_a 		0.967 0.973
NAC029
M07181_2.00 		Arabidopsis thaliana
WYACGBMAYYD
HRRTKVCGTRW		 Dap-seq
OMalley et al.(2016)
NAP_col_v3a 		0.967 0.973
For this family, TFs with SR scores > 0.870 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra004385.1-P NAC/NAM 10 134

Links

Other NAC/NAM family TFs
Other Brassica rapa TFs

59 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29813.m001519 Ricinus communis 29813.m001519 I 0.948
Aquca_002_00663 Aquilegia coerulea Aquca_002_00663 I 0.922
Bo6g095510 Brassica oleracea Bo6g095510 I 0.961
Bo6g108930 Brassica oleracea Bo6g108930 I 0.969
Bostr.10273s0418 Boechera stricta Bostr.10273s0418 I 0.967
Cagra.0887s0008 Capsella grandiflora Cagra.0887s0008 I 0.967
Carubv10020776m.g Capsella rubella Carubv10020776m.g I 0.967
cassava1317.valid.m1 Manihot esculenta cassava1317.valid.m1 I 0.944
cassava26728.m1 Manihot esculenta cassava26728.m1 I 0.875
Ca_16379 Cicer arietinum Ca_16379 I 0.920
Ca_18090 Cicer arietinum Ca_18090 I 0.918
chr2.CM0641.320.nc Lotus japonicus chr2.CM0641.320.nc I 0.896
Ciclev10032304m.g Citrus clementina Ciclev10032304m.g I 0.947
Cla010367 Citrullus lanatus Cla010367 I 0.933
Cucsa.284890 Cucumis sativus Cucsa.284890 I 0.933
Eucgr.B03208 Eucalyptus grandis Eucgr.B03208 I 0.917
Eucgr.G02486 Eucalyptus grandis Eucgr.G02486 I 0.941
evm.TU.supercontig_1.48 Carica papaya evm.TU.supercontig_1.48 I 0.940
GLYMA01G06150 Glycine max GLYMA01G06150 I 0.935
GLYMA02G12220 Glycine max GLYMA02G12220 I 0.938
GLYMA07G35630 Glycine max GLYMA07G35630 I 0.943
GLYMA20G04400 Glycine max GLYMA20G04400 I 0.940
Gorai.005G142300 Gossypium raimondii Gorai.005G142300 I 0.940
Gorai.008G179900 Gossypium raimondii Gorai.008G179900 I 0.942
Lus10026617.g Linum usitatissimum Lus10026617.g I 0.907
Lus10030446.g Linum usitatissimum Lus10030446.g I 0.907
Lus10036773.g Linum usitatissimum Lus10036773.g I 0.942
Lus10037156.g Linum usitatissimum Lus10037156.g I 0.941
MDP0000262990 Malus domestica MDP0000262990 I 0.940
MDP0000481448 Malus domestica MDP0000481448 I 0.946
mgf016848m Mimulus guttatus mgf016848m I 0.911
mgf022118m Mimulus guttatus mgf022118m I 0.943
MTR_4g081870 Medicago truncatula MTR_4g081870 I 0.938
MTR_5g041940 Medicago truncatula MTR_5g041940 I 0.901
NAC029 Arabidopsis thaliana AT1G69490 D 0.967
NAP Vitis vinifera VIT_01s0026g02710 I 0.945
NAP Arabidopsis lyrata fgenesh2_kg.2__1206__AT1G69490.1 I 0.967
OB12G11500 Oryza brachyantha OB12G11500 I 0.872
OPUNC11G01330 Oryza punctata OPUNC11G01330 I 0.885
OPUNC12G01370 Oryza punctata OPUNC12G01370 I 0.885
orange1.1g023197m.g Citrus sinensis orange1.1g023197m.g I 0.947
PGSC0003DMG400002824 Solanum tuberosum PGSC0003DMG400002824 I 0.940
PGSC0003DMG400018435 Solanum tuberosum PGSC0003DMG400018435 I 0.940
PK25119.1 Cannabis sativa PK25119.1 I 0.945
Pm006470 Prunus mume Pm006470 I 0.947
POPTR_0008s08850 Populus trichocarpa POPTR_0008s08850 I 0.943
POPTR_0010s17350 Populus trichocarpa POPTR_0010s17350 I 0.901
PRUPE_ppa009530mg Prunus persica PRUPE_ppa009530mg I 0.947
SapurV1A.0063s0610 Salix purpurea SapurV1A.0063s0610 I 0.914
SapurV1A.0063s0620 Salix purpurea SapurV1A.0063s0620 I 0.914
SapurV1A.0801s0090 Salix purpurea SapurV1A.0801s0090 I 0.944
Sb05g001580 Sorghum bicolor Sb05g001580 I 0.871
Sb08g001940 Sorghum bicolor Sb08g001940 I 0.880
Si010410m.g Setaria italica Si010410m.g I 0.880
Si026530m.g Setaria italica Si026530m.g I 0.881
Solyc04g005610.2 Solanum lycopersicum Solyc04g005610.2 I 0.924
Solyc05g007770.2 Solanum lycopersicum Solyc05g007770.2 I 0.934
TCM_011671 Theobroma cacao TCM_011671 I 0.924
Thhalv10018997m.g Eutrema salsugineum Thhalv10018997m.g I 0.967