NR1I2 (Loxodonta africana)
Nuclear receptor

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00105 (zf-C4) IPR001628 ENSLAFG00000007829 T303530_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
NR1I2
M03925_2.00 		Homo sapiens
RGKKCRNNVRGKKCR
YGMMCYBNNYGMMCY		 SELEX
Nitta et al.(2015)
NR1I2_1 		0.961 0.843
NR1I2
M05625_2.00 		Homo sapiens
VRGTTCRNNSRGKTCRH
DYGAMCYSNNYGAACYB		 SELEX
Yin et al.(2017)
NR1I2_eDBD_HT-SELEX 		0.961 0.843
NR1I2
M09283_2.00 		Homo sapiens
DDRRBTYMDNNRAGKTCAN
NTGAMCTYNNHKRAVYYHH		 Misc
Kulakovskiy et al.(2013)
NR1I2_HUMAN.H11MO.0.C 		0.961 0.843
NR1I2
M05626_2.00 		Homo sapiens
VRGKKCRNNVRGKKCRN
NYGMMCYBNNYGMMCYB		 SELEX
Yin et al.(2017)
NR1I2_eDBD_Methyl-HT-SELEX 		0.961 0.843
Nr1i2
M09316_2.00 		Mus musculus
DDRRBTYMDNNRAGKTCAN
NTGAMCTYNNHKRAVYYHH		 Misc
Kulakovskiy et al.(2013)
NR1I2_MOUSE.H11MO.0.C 		0.910 0.829
ENSPMAG00000000180
M02403_2.00 		Petromyzon marinus
RGKWCRN
NYGWMCY		 PBM
Weirauch et al.(2014)
pTH5509 		0.906 0.629
VDR
M03363_2.00 		Homo sapiens
GRGTTCAYHGRGTTCA
TGAACYCDRTGAACYC		 SELEX
Jolma et al.(2013)
VDR_1 		0.873 0.614
Vdr
M03429_2.00 		Mus musculus
RRGTTCAYHGRGTTCA
TGAACYCDRTGAACYY		 SELEX
Jolma et al.(2013)
Vdr_1 		0.873 0.614
VDR
M05877_2.00 		Homo sapiens
HRRGTTCA
TGAACYYD		 SMiLE-seq
Isakova et al.(2017)
VDR 		0.873 0.614
VDR
M09269_2.00 		Homo sapiens
NRGGKCANNGRGKKCR
YGMMCYCNNTGMCCYN		 Misc
Kulakovskiy et al.(2013)
VDR_HUMAN.H11MO.0.A 		0.873 0.614
Vdr
M09315_2.00 		Mus musculus
NRGGKCANNGRGKKCR
YGMMCYCNNTGMCCYN		 Misc
Kulakovskiy et al.(2013)
VDR_MOUSE.H11MO.0.A 		0.873 0.614
VDR
M09606_2.00 		Homo sapiens
NRRGGTCANNRRGKKCANNN
NNNTGMMCYYNNTGACCYYN		 Misc
Heinz et al.(2010)
GM10855-VDR+vitD_GSE22484 		0.873 0.614
VDR
M11116_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$VDR_Q3 		0.873 0.614
VDR
M11117_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$VDR_Q6_01 		0.873 0.614
VDR
M11118_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$VDR_Q6 		0.873 0.614
ENSGALG00000028624
M02398_2.00 		Gallus gallus
GRGKTCAH
DTGAMCYC		 PBM
Weirauch et al.(2014)
pTH6492 		0.814 0.629
For this family, TFs with SR scores > 0.745 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSLAFP00000006570 Nuclear receptor 37 107

Links

Other Nuclear receptor family TFs
Other Loxodonta africana TFs

133 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACOC_0000909601 Angiostrongylus costaricensis ACOC_0000909601 N
ANCCEY_02227 Ancylostoma ceylanicum ANCCEY_02227 N
ASIM_0001061401 Anisakis simplex ASIM_0001061401 N
ASU_13814 Ascaris suum ASU_13814 N
Bm4196 Brugia malayi Bm4196 N
CBG14076 Caenorhabditis briggsae CBG14076 N
CBN28426 Caenorhabditis brenneri CBN28426 N
DICVIV_06612 Dictyocaulus viviparus DICVIV_06612 N
EVEC_0001355301 Enterobius vermicularis EVEC_0001355301 N
GPLIN_001118300 Globodera pallida GPLIN_001118300 N
HPLM_0000886801 Haemonchus placei HPLM_0000886801 N
L596_g148 Steinernema carpocapsae L596_g148 N
L889_g31190 Steinernema feltiae L889_g31190 N
L892_g12859 Steinernema scapterisci L892_g12859 N
L893_g14515 Steinernema glaseri L893_g14515 N
L898_g33187 Steinernema monticolum L898_g33187 N
LOAG_16508 Loa loa LOAG_16508 N
maker-nMf.1.1.scaf01187-augustus-gene-0.14 Meloidogyne floridensis maker-nMf.1.1.scaf01187-augustus-gene-0.14 N
nAv.1.0.1.g08576 Acanthocheilonema viteae nAv.1.0.1.g08576 N
NBR_0000487701 Nippostrongylus brasiliensis NBR_0000487701 N
nDi.2.2.2.g00913 Dirofilaria immitis nDi.2.2.2.g00913 N
NECAME_03708 Necator americanus NECAME_03708 N
nLs.2.1.2.g06387 Litomosoides sigmodontis nLs.2.1.2.g06387 N
nOo.2.0.1.g07401 Onchocerca ochengi nOo.2.0.1.g07401 N
PEQ_0001215301 Parascaris equorum PEQ_0001215301 N
Ppa-npax-4 Pristionchus pacificus PPA03062 N
PTRK_0001095200 Parastrongyloides trichosuri PTRK_0001095200 N
scaffold1066-EXSNAP2012.3 Pristionchus exspectatus scaffold1066-EXSNAP2012.3 N
SPAL_0000243500 Strongyloides papillosus SPAL_0000243500 N
SSTP_0000993700 Strongyloides stercoralis SSTP_0000993700 N
TCLT_0000997101 Thelazia callipaeda TCLT_0000997101 N
TCNE_0000151101 Toxocara canis TCNE_0000151101 N
WBGene00239907 Onchocerca volvulus WBGene00239907 N
WUBG_05014 Wuchereria bancrofti WUBG_05014 N