AACERI_AaceriAAL010W (Saccharomycetaceae sp ashbya aceri)
RFX

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02257 (RFX_DNA_binding) IPR003150 AACERI_AaceriAAL010W T317994_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RFX1
M00066_2.00 		Saccharomyces cerevisiae
NSGTTGCYAN
NTRGCAACSN		 PBM
Badis et al.(2008)
RFX1_4537 		0.730 0.772
RFX1
M07494_2.00 		Saccharomyces cerevisiae
BGTTRCYA
TRGYAACV		 PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0365.1 		0.730 0.772
RFX1
M08600_2.00 		Saccharomyces cerevisiae
CGTYRBYAYRGYWACM
KGTWRCYRTRVYRACG		 Misc
DeBoer et al.(2011)
YLR176C_1478 		0.730 0.772
RFX1
M08601_2.00 		Saccharomyces cerevisiae
BGTTRCYA
TRGYAACV		 Misc
DeBoer et al.(2011)
YLR176C_496 		0.730 0.772
RFX1
M11251_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$RFX1_02 		0.730 0.772
For this family, TFs with SR scores > 0.650 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AGO09981 RFX 342 420

Links

Other RFX family TFs
Other Saccharomycetaceae sp ashbya aceri TFs

260 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29968.m000644 Ricinus communis 29968.m000644 I
AT2G01818 Arabidopsis thaliana AT2G01818 D
Bo2g134600 Brassica oleracea Bo2g134600 I
Bo7g078820 Brassica oleracea Bo7g078820 I
Bostr.0556s0005 Boechera stricta Bostr.0556s0005 I
Cagra.2235s0037 Capsella grandiflora Cagra.2235s0037 I
Carubv10017978m.g Capsella rubella Carubv10017978m.g I
cassava20325.m1 Manihot esculenta cassava20325.m1 I
cassava40347.m1 Manihot esculenta cassava40347.m1 N
Ciclev10016611m.g Citrus clementina Ciclev10016611m.g N
Cla005897 Citrullus lanatus Cla005897 N
Cucsa.012070 Cucumis sativus Cucsa.012070 N
Eucgr.G02080 Eucalyptus grandis Eucgr.G02080 I
evm.TU.supercontig_2.160 Carica papaya evm.TU.supercontig_2.160 I
fgenesh2_kg.5__89__AT2G01818.1 Arabidopsis lyrata fgenesh2_kg.5__89__AT2G01818.1 I
Gorai.005G152700 Gossypium raimondii Gorai.005G152700 I
Gorai.008G170500 Gossypium raimondii Gorai.008G170500 I
Gorai.013G029900 Gossypium raimondii Gorai.013G029900 I
Lus10003680.g Linum usitatissimum Lus10003680.g N
Lus10013242.g Linum usitatissimum Lus10013242.g I
Lus10028998.g Linum usitatissimum Lus10028998.g N
Lus10030763.g Linum usitatissimum Lus10030763.g I
MDP0000290118 Malus domestica MDP0000290118 I
orange1.1g027579m.g Citrus sinensis orange1.1g027579m.g N
PGSC0003DMG400029466 Solanum tuberosum PGSC0003DMG400029466 N
PK02661.1 Cannabis sativa PK02661.1 I
Pm005894 Prunus mume Pm005894 I
POPTR_0010s11410 Populus trichocarpa POPTR_0010s11410 I
PRUPE_ppa011075mg Prunus persica PRUPE_ppa011075mg I
SapurV1A.0015s0650 Salix purpurea SapurV1A.0015s0650 I
SapurV1A.0055s0220 Salix purpurea SapurV1A.0055s0220 I
Solyc04g008090.2 Solanum lycopersicum Solyc04g008090.2 N
TCM_011266 Theobroma cacao TCM_011266 I
Thhalv10005480m.g Eutrema salsugineum Thhalv10005480m.g I
VIT_01s0011g06060 Vitis vinifera VIT_01s0011g06060 N