ENSPMAG00000002263 (Petromyzon marinus)
RFX

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02257 (RFX_DNA_binding) IPR003150 ENSPMAG00000002263 T318453_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RFX3
M03452_2.00 		Homo sapiens
NGTTRCCATGGHAACV
BGTTDCCATGGYAACN		 SELEX
Jolma et al.(2013)
RFX3_1 		0.770 0.885
RFX3
M03453_2.00 		Homo sapiens
BGTTGCTARGCAACS
SGTTGCYTAGCAACV		 SELEX
Jolma et al.(2013)
RFX3_2 		0.770 0.885
RFX3
M02750_2.00 		Homo sapiens
GTTRYYATGG
CCATRRYAAC		 SELEX
Jolma et al.(2010)
RFX3_dimer 		0.770 0.885
RFX3
M05715_2.00 		Homo sapiens
NGTTRYYATRRYAACN
NGTTRYYATRRYAACN		 SELEX
Yin et al.(2017)
RFX3_eDBD_HT-SELEX_1 		0.770 0.885
RFX3
M05716_2.00 		Homo sapiens
BGTTGCTARGCAACS
SGTTGCYTAGCAACV		 SELEX
Yin et al.(2017)
RFX3_eDBD_HT-SELEX_2 		0.770 0.885
RFX3
M09361_2.00 		Homo sapiens
BGTTRCCATGGYRN
NYRCCATGGYAACV		 Misc
Kulakovskiy et al.(2013)
RFX3_HUMAN.H11MO.0.B 		0.770 0.885
RFX3
M09627_2.00 		Homo sapiens
BNGTTGCCATGGCAAC
GTTGCCATGGCAACNV		 Misc
Heinz et al.(2010)
K562-RFX3_SRA012198 		0.770 0.885
RFX3
M05717_2.00 		Homo sapiens
BGTTRYYATRRYAACV
BGTTRYYATRRYAACV		 SELEX
Yin et al.(2017)
RFX3_eDBD_Methyl-HT-SELEX_1 		0.770 0.885
RFX3
M05718_2.00 		Homo sapiens
BGTTGCTARGCAACV
BGTTGCYTAGCAACV		 SELEX
Yin et al.(2017)
RFX3_eDBD_Methyl-HT-SELEX_2 		0.770 0.885
RFX2
M03454_2.00 		Homo sapiens
BGTTRCCATGGYAACV
BGTTRCCATGGYAACV		 SELEX
Jolma et al.(2013)
RFX2_1 		0.768 0.885
RFX2
M03455_2.00 		Homo sapiens
SGTTGCTARGCAACS
SGTTGCYTAGCAACS		 SELEX
Jolma et al.(2013)
RFX2_2 		0.768 0.885
RFX2
M05719_2.00 		Homo sapiens
NGTWDYYATRRHWACN
NGTWDYYATRRHWACN		 SELEX
Yin et al.(2017)
RFX2_eDBD_HT-SELEX 		0.768 0.885
RFX2
M09362_2.00 		Homo sapiens
YNGTTGCCATGGVRACVV
BBGTYBCCATGGCAACNR		 Misc
Kulakovskiy et al.(2013)
RFX2_HUMAN.H11MO.0.A 		0.768 0.885
RFX2
M09628_2.00 		Homo sapiens
BGTTKCCATGGMAAC
GTTKCCATGGMAACV		 Misc
Heinz et al.(2010)
LoVo-RFX2_GSE49402 		0.768 0.885
RFX2
M05720_2.00 		Homo sapiens
BGTTRCCATGRYAACV
BGTTRYCATGGYAACV		 SELEX
Yin et al.(2017)
RFX2_eDBD_Methyl-HT-SELEX 		0.768 0.885
Rfx2
M03461_2.00 		Mus musculus
BGTTRCCATGGYAACV
BGTTRCCATGGYAACV		 SELEX
Jolma et al.(2013)
Rfx2_1 		0.766 0.872
Rfx2
M03462_2.00 		Mus musculus
SGTTGCTARGCAACV
BGTTGCYTAGCAACS		 SELEX
Jolma et al.(2013)
Rfx2_2 		0.766 0.872
Rfx2
M05888_2.00 		Mus musculus
NGTTRCYATGGHDAY
RTHDCCATRGYAACN		 SMiLE-seq
Isakova et al.(2017)
RFX2 		0.766 0.872
Rfx2
M09366_2.00 		Mus musculus
NBYBGTYNCCMTGGCAACNSSS
SSSNGTTGCCAKGGNRACVRVN		 Misc
Kulakovskiy et al.(2013)
RFX2_MOUSE.H11MO.0.A 		0.766 0.872
RFX1
M02447_2.00 		Anolis carolinensis
GTHRCYANGN
NCNTRGYDAC		 PBM
Weirauch et al.(2014)
pTH9223 		0.761 0.872
RFX1
M02451_2.00 		Tetraodon nigroviridis
GTHDYYANGN
NCNTRRHDAC		 PBM
Weirauch et al.(2014)
pTH9385 		0.761 0.872
RFX1
M05723_2.00 		Homo sapiens
BGTTRYCATGRYAACV
BGTTRYCATGRYAACV		 SELEX
Yin et al.(2017)
RFX1_eDBD_HT-SELEX 		0.761 0.872
Rfx1
M08162_2.00 		Mus musculus
GTTGCYADGGNRAC
GTYNCCHTRGCAAC		 ChIP-seq
Mathelier et al.(2014)
MA0509.1 		0.761 0.872
RFX1
M09363_2.00 		Homo sapiens
BBBSSNGTTGCCADGGNRMCVV
BBGKYNCCHTGGCAACNSSVVV		 Misc
Kulakovskiy et al.(2013)
RFX1_HUMAN.H11MO.0.B 		0.761 0.872
Rfx1
M09367_2.00 		Mus musculus
BBBSSNGTTGCCADGGNRMCVV
BBGKYNCCHTGGCAACNSSVVV		 Misc
Kulakovskiy et al.(2013)
RFX1_MOUSE.H11MO.0.A 		0.761 0.872
RFX1
M11245_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$EFC_Q6 		0.761 0.872
RFX1
M11246_2.00 		Homo sapiens
HNGTTRCYWVGYDMYNN
NNRKHRCBWRGYAACND		 Transfac
Matys et al.(2006)
V$RFX1_01 		0.761 0.872
RFX1
M11247_2.00 		Homo sapiens
HNGTTRCYWBVGYDMYNN
NNRKHRCBVWRGYAACND		 Transfac
Matys et al.(2006)
V$RFX1_02 		0.761 0.872
RFX1
M11248_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX1_Q6 		0.761 0.872
RFX1
M05724_2.00 		Homo sapiens
BGTWRYCATGRYWACV
BGTWRYCATGRYWACV		 SELEX
Yin et al.(2017)
RFX1_eDBD_Methyl-HT-SELEX 		0.761 0.872
Rfx3
M00188_2.00 		Mus musculus
SNTRRHDACN
NGTHDYYANS		 PBM
Badis et al.(2009)
Rfx3_3961 		0.760 0.859
Rfx3
M03463_2.00 		Mus musculus
SGTTRCCATGGYAACS
SGTTRCCATGGYAACS		 SELEX
Jolma et al.(2013)
Rfx3_1 		0.760 0.859
Rfx3
M09368_2.00 		Mus musculus
BBGTTGCCATGGNRAC
GTYNCCATGGCAACVV		 Misc
Kulakovskiy et al.(2013)
RFX3_MOUSE.H11MO.0.C 		0.760 0.859
GB41876
M02453_2.00 		Apis mellifera
GTHDCYANVN
NBNTRGHDAC		 PBM
Weirauch et al.(2014)
pTH9226 		0.760 0.846
XP_002157607.1
M02456_2.00 		Hydra magnipapillata
GTHDYYDNVN
NBNHRRHDAC		 PBM
Weirauch et al.(2014)
pTH9199 		0.759 0.821
G4VLF2_SCHMA
M02452_2.00 		Schistosoma mansoni
GTTGCTAD
HTAGCAAC		 PBM
Weirauch et al.(2014)
pTH8587 		0.759 0.821
Sjc_0102030
M02455_2.00 		Schistosoma japonicum
GTTRCYANG
CNTRGYAAC		 PBM
Weirauch et al.(2014)
pTH9285 		0.757 0.808
RFX2
M02449_2.00 		Homo sapiens
BGTHRYYADG
CHTRRYDACV		 PBM
Weirauch et al.(2014)
pTH9194 		0.757 0.859
RFX2
M02450_2.00 		Ornithorhynchus anatinus
NGTHRYYANV
BNTRRYDACN		 PBM
Weirauch et al.(2014)
pTH9269 		0.757 0.859
Rfx
M03959_2.00 		Drosophila melanogaster
NGTHRCYATRGYDACN
NGTHRCYATRGYDACN		 SELEX
Nitta et al.(2015)
Rfx_1 		0.750 0.795
Rfx
M03960_2.00 		Drosophila melanogaster
GTTGCTARGCAAC
GTTGCYTAGCAAC		 SELEX
Nitta et al.(2015)
Rfx_2 		0.750 0.795
Rfx
M03961_2.00 		Drosophila melanogaster
BGTWRCCATGGYWACV
BGTWRCCATGGYWACV		 SELEX
Nitta et al.(2015)
Rfx_3 		0.750 0.795
Rfx
M03962_2.00 		Drosophila melanogaster
GTTRCYAWTRGYAAC
GTTRCYAWTRGYAAC		 SELEX
Nitta et al.(2015)
Rfx_4 		0.750 0.795
Rfx
M03963_2.00 		Drosophila melanogaster
GTTGCTARGCAAC
GTTGCYTAGCAAC		 SELEX
Nitta et al.(2015)
Rfx_5 		0.750 0.795
PHUM046580
M02454_2.00 		Pediculus humanus
NGTHDCYANV
BNTRGHDACN		 PBM
Weirauch et al.(2014)
pTH9278 		0.743 0.833
daf-19
M00709_2.00 		Caenorhabditis elegans
SGTTRCTADG
CHTAGYAACS		 PBM
Narasimhan et al.(2015)
pTH10021 		0.735 0.705
RFX4
M02448_2.00 		Cavia porcellus
GTHDYYNNGN
NCNNRRHDAC		 PBM
Weirauch et al.(2014)
pTH9249 		0.698 0.615
Rfx4
M00186_2.00 		Mus musculus
GTHDYYNNSN
NSNNRRHDAC		 PBM
Badis et al.(2009)
Rfx4_3761 		0.698 0.615
RFX4
M03456_2.00 		Homo sapiens
NGTWRYCATRGHWACN
NGTWDCYATGRYWACN		 SELEX
Jolma et al.(2013)
RFX4_1 		0.698 0.615
RFX4
M03457_2.00 		Homo sapiens
NGTTGCYRRGCAACS
SGTTGCYYRGCAACN		 SELEX
Jolma et al.(2013)
RFX4_2 		0.698 0.615
RFX4
M05721_2.00 		Homo sapiens
BGTWRYCATGRYWACV
BGTWRYCATGRYWACV		 SELEX
Yin et al.(2017)
RFX4_eDBD_HT-SELEX 		0.698 0.615
RFX4
M05722_2.00 		Homo sapiens
BGTWRYCATGRYWACV
BGTWRYCATGRYWACV		 SELEX
Yin et al.(2017)
RFX4_eDBD_Methyl-HT-SELEX 		0.698 0.615
Rfx6
M09365_2.00 		Mus musculus
BDGTWKCYNDG
CHNRGMAACHV		 Misc
Kulakovskiy et al.(2013)
RFX6_MOUSE.H11MO.0.C 		0.685 0.628
For this family, TFs with SR scores > 0.650 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSPMAP00000002500 RFX 183 260

Links

Other RFX family TFs
Other Petromyzon marinus TFs

646 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AB04989.1 Alternaria brassicicola AB04989.1 I
ACEP14716 Atta cephalotes ACEP14716 I
AGABI2DRAFT_44722 Agaricus bisporus AGABI2DRAFT_44722 I
AMTR_s00047p00131170 Amborella trichopoda AMTR_s00047p00131170 I
ANCDUO_13676 Ancylostoma duodenale ANCDUO_13676 I
Aquca_037_00296 Aquilegia coerulea Aquca_037_00296 I
Aquca_124_00015 Aquilegia coerulea Aquca_124_00015 I
BN946_scf185000.g31 Trametes cinnabarina BN946_scf185000.g31 I
Bo2g007300 Brassica oleracea Bo2g007300 I
Bra028725 Brassica rapa Bra028725 I
Cflo_04179--XP_623088.1_APIME Camponotus floridanus Cflo_04179--XP_623088.1_APIME I
CHGG_08967 Chaetomium globosum CHGG_08967 N
DACRYDRAFT_75233 Dacryopinax sp DACRYDRAFT_75233 I
ENSAPLG00000006951 Anas platyrhynchos ENSAPLG00000006951 I
ENSECAG00000008702 Equus caballus ENSECAG00000008702 I
estExt_fgenesh3_kg.C_20416 Heterobasidion annosum estExt_fgenesh3_kg.C_20416 I
EURHEDRAFT_409588 Aspergillus ruber EURHEDRAFT_409588 I
e_gwh1.1.1.994.1 Pichia stipitis e_gwh1.1.1.994.1 I
FIBRA_07233 Fibroporia radiculosa FIBRA_07233 I
FOMPIDRAFT_1017649 Fomitopsis pinicola FOMPIDRAFT_1017649 I
GALMADRAFT_264138 Galerina marginata GALMADRAFT_264138 I
GLOINDRAFT_79885 Rhizophagus irregularis GLOINDRAFT_79885 I
Gorai.004G244700 Gossypium raimondii Gorai.004G244700 I
GRMZM2G149238 Zea mays GRMZM2G149238 I
GRMZM2G161418 Zea mays GRMZM2G161418 I
gwh2.1.1035.1 Phanerochaete chrysosporium gwh2.1.1035.1 I
GYMLUDRAFT_48721 Gymnopus luxurians GYMLUDRAFT_48721 I
HETIRDRAFT_242765 Heterobasidion irregulare HETIRDRAFT_242765 I
J056_000874 Wallemia ichthyophaga J056_000874 I
K437DRAFT_258899 Tilletiaria anomala K437DRAFT_258899 I
M378DRAFT_176716 Amanita muscaria M378DRAFT_176716 I
M404DRAFT_1000909 Pisolithus tinctorius M404DRAFT_1000909 I
M408DRAFT_329006 Serendipita vermifera M408DRAFT_329006 I
M413DRAFT_438675 Hebeloma cylindrosporum M413DRAFT_438675 I
M438DRAFT_342525 Aureobasidium pullulans M438DRAFT_342525 I
MLOC_37365 Hordeum vulgare MLOC_37365 I
Moror_8271 Moniliophthora roreri Moror_8271 I
OLONG_006902 Oryza longistaminata OLONG_006902 I
OLONG_010453 Oryza longistaminata OLONG_010453 I
OPUNC01G04710 Oryza punctata OPUNC01G04710 I
OPUNC03G21560 Oryza punctata OPUNC03G21560 I
ORGLA06G0285000 Oryza glaberrima ORGLA06G0285000 I
Pavir.Ib04166 Panicum virgatum Pavir.Ib04166 I
Pavir.J18057 Panicum virgatum Pavir.J18057 I
Pavir.J26398 Panicum virgatum Pavir.J26398 I
PDE_04702 Penicillium oxalicum PDE_04702 I
PDK_20s1328661g002 Phoenix dactylifera PDK_20s1328661g002 I
PHACADRAFT_256913 Phanerochaete carnosa PHACADRAFT_256913 I
PHLGIDRAFT_111859 Phlebiopsis gigantea PHLGIDRAFT_111859 I
PICST_38880 Scheffersomyces stipitis PICST_38880 I
PILCRDRAFT_51869 Piloderma croceum PILCRDRAFT_51869 I
POPTR_0019s04890 Populus trichocarpa POPTR_0019s04890 I
PV04_08198 Capronia semiimmersa PV04_08198 I
PV10_01351 Exophiala mesophila PV10_01351 I
RO3G_16620 Rhizopus oryzae RO3G_16620 I
SERLA73DRAFT_76226 Serpula lacrymans SERLA73DRAFT_76226 I
Si023295m.g Setaria italica Si023295m.g I
SKUD_163604 Saccharomyces kudriavzevii SKUD_163604 I
SNAPOd2T00004230001 Oikopleura dioica SNAPOd2T00004230001 I
SU7_0942 Saccharomyces arboricola SU7_0942 I
TBPL2 Meleagris gallopavo ENSMGAG00000013657 I
TBPL2 Gallus gallus ENSGALG00000012145 I
TBPL2 Cavia porcellus ENSCPOG00000006151 I
THOM_0429 Trachipleistophora hominis THOM_0429 I
Traes_5BS_AD70A5AF7 Triticum aestivum Traes_5BS_AD70A5AF7 I
TriadG50358 Trichoplax adhaerens TriadG50358 I
UREG_07344 Uncinocarpus reesii UREG_07344 I
VCUG_02118 Vavraia culicis VCUG_02118 I
WALSEDRAFT_33220 Wallemia sebi WALSEDRAFT_33220 I