CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

GK25373 *(Drosophila willistoni)* Runt
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00853 (Runt)	IPR013524	FBgn0227332	T319562_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
lz M03964_2.00	Drosophila melanogaster	HRACCGCAAHM	KDTTGCGGTYD	SELEX Nitta et al.(2015) lz_1	0.923	0.923
lz M03965_2.00	Drosophila melanogaster	HVACCRCARWAACCRCAV	BTGYGGTTWYTGYGGTBD	SELEX Nitta et al.(2015) lz_2	0.923	0.923
lz M03966_2.00	Drosophila melanogaster	WRACCRCAWTAACCRCAA	TTGYGGTTAWTGYGGTYW	SELEX Nitta et al.(2015) lz_3	0.923	0.923
lz M03967_2.00	Drosophila melanogaster	HRACCGCAAAACCRCAR	YTGYGGTTTTGCGGTYD	SELEX Nitta et al.(2015) lz_4	0.923	0.923
Runx1 M08163_2.00	Mus musculus	HRRCCACARVN	NBYTGTGGYYD	ChIP-seq Mathelier et al.(2014) MA0002.2	0.746	0.746
RUNX1 M09371_2.00	Homo sapiens	NWAACCACARV	BYTGTGGTTWN	Misc Kulakovskiy et al.(2013) RUNX1_HUMAN.H11MO.0.A	0.746	0.746
Runx1 M09372_2.00	Mus musculus	VWRACCACARVV	BBYTGTGGTYWB	Misc Kulakovskiy et al.(2013) RUNX1_MOUSE.H11MO.0.A	0.746	0.746
RUNX1 M09632_2.00	Homo sapiens	HAACCACADV	BHTGTGGTTD	Misc Heinz et al.(2010) Jurkat-RUNX1_GSE29180	0.746	0.746
RUNX1 M09631_2.00	Homo sapiens	VCCACWTCCTBY	RVAGGAWGTGGB	Misc Heinz et al.(2010) Jurkat-RUNX1_GSE17954	0.746	0.746
Runx1 M09633_2.00	Mus musculus	NWAACCACAR	YTGTGGTTWN	Misc Heinz et al.(2010) HPC7-Runx1_GSE22178	0.746	0.746
RUNX1 M11258_2.00	Homo sapiens	ACCRCA	TGYGGT	Transfac Matys et al.(2006) V$AML1_01	0.746	0.746
RUNX1 M11259_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$AML1_Q4_01	0.746	0.746
RUNX1 M11260_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$AML1_Q4_02	0.746	0.746
RUNX1 M11261_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$AML1_Q4	0.746	0.746
RUNX1 M11262_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$AML1_Q5	0.746	0.746
RUNX1 M11263_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$AML1_Q6	0.746	0.746
Runx2 M01307_2.00	Mus musculus	NHDACCRCAN	NTGYGGTHDN	PBM Lambert et al.(2019) pTH9764	0.738	0.738
RUNX2 M03468_2.00	Homo sapiens	HRACCGCAAACCRCRD	HYGYGGTTTGCGGTYD	SELEX Jolma et al.(2013) RUNX2_1	0.738	0.738
RUNX2 M03469_2.00	Homo sapiens	HRACCRCADWWACCRCAD	HTGYGGTWWHTGYGGTYD	SELEX Jolma et al.(2013) RUNX2_2	0.738	0.738
RUNX2 M03470_2.00	Homo sapiens	WAACCRCAR	YTGYGGTTW	SELEX Jolma et al.(2013) RUNX2_3	0.738	0.738
RUNX2 M05733_2.00	Homo sapiens	NHRACCRCADWAACCRCAVN	NBTGYGGTTWHTGYGGTYDN	SELEX Yin et al.(2017) RUNX2_eDBD_HT-SELEX	0.738	0.738
run M06444_2.00	Drosophila melanogaster	WAACCGCAR	YTGCGGTTW	B1H Zhu et al.(2011) run_Bgb_NBT_FBgn0003300	0.738	0.738
RUNX2 M09370_2.00	Homo sapiens	MMHAACCACAVVMH	DKBBTGTGGTTDKK	Misc Kulakovskiy et al.(2013) RUNX2_HUMAN.H11MO.0.A	0.738	0.738
Runx2 M09373_2.00	Mus musculus	VWRACCACARVV	BBYTGTGGTYWB	Misc Kulakovskiy et al.(2013) RUNX2_MOUSE.H11MO.0.A	0.738	0.738
RUNX2 M09630_2.00	Homo sapiens	NHVACCACANNN	NNNTGTGGTBDN	Misc Heinz et al.(2010) PCa-RUNX2_GSE33889	0.738	0.738
RUNX2 M11255_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$AML3_Q3	0.738	0.738
RUNX2 M11256_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$AML3_Q6	0.738	0.738
RUNX2 M11257_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$OSF2_Q6	0.738	0.738
RUNX2 M05734_2.00	Homo sapiens	NWAACCACRAAAACCACRRN	NYYGTGGTTTTYGTGGTTWN	SELEX Yin et al.(2017) RUNX2_eDBD_Methyl-HT-SELEX	0.738	0.738
RUNX3 M03464_2.00	Homo sapiens	HRACCGCAAACCRCAN	NTGYGGTTTGCGGTYD	SELEX Jolma et al.(2013) RUNX3_1	0.731	0.731
RUNX3 M03465_2.00	Homo sapiens	WAACCRCARN	NYTGYGGTTW	SELEX Jolma et al.(2013) RUNX3_2	0.731	0.731
RUNX3 M03466_2.00	Homo sapiens	HDACCRCADWAACCRCRN	NYGYGGTTWHTGYGGTHD	SELEX Jolma et al.(2013) RUNX3_3	0.731	0.731
RUNX3 M03467_2.00	Homo sapiens	HRACCRCAAH	DTTGYGGTYD	SELEX Jolma et al.(2013) RUNX3_4	0.731	0.731
RUNX3 M02751_2.00	Homo sapiens	WACCRCAM	KTGYGGTW	SELEX Jolma et al.(2010) RUNX3_monomer	0.731	0.731
RUNX3 M05731_2.00	Homo sapiens	YWAACCGCAAAAACCGCARV	BYTGCGGTTTTTGCGGTTWR	SELEX Yin et al.(2017) RUNX3_FL_HT-SELEX	0.731	0.731
RUNX3 M09369_2.00	Homo sapiens	HAACCACARN	NYTGTGGTTD	Misc Kulakovskiy et al.(2013) RUNX3_HUMAN.H11MO.0.A	0.731	0.731
Runx3 M09374_2.00	Mus musculus	NHRACCACARVN	NBYTGTGGTYDN	Misc Kulakovskiy et al.(2013) RUNX3_MOUSE.H11MO.0.A	0.731	0.731
RUNX3 M11252_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$AML2_Q3_01	0.731	0.731
RUNX3 M11253_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$AML2_Q3	0.731	0.731
RUNX3 M11254_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$AML2_Q4	0.731	0.731
RUNX3 M05732_2.00	Homo sapiens	HWAACCACRAAAACCACRARN	NYTYGTGGTTTTYGTGGTTWD	SELEX Yin et al.(2017) RUNX3_FL_Methyl-HT-SELEX	0.731	0.731
For this family, TFs with SR scores > 0.700* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
FBpp0254516	Runt	129	258	VAERQLEYPGELVRTSNPYFLCSALPSHWRSNKTLPLAFKVVALADVGDGTYVTIRAGNDENCCAELRNCTAQMKNCVAKFNDLRFVGRSGRGKSFTLTITVATSPPQVATYAKAIKVTVDGPREPRSKT

Links
Other Runt family TFs
Other *Drosophila willistoni* TFs

338 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
ACAC_0000945701	Angiostrongylus cantonensis	ACAC_0000945701	N
ANCCAN_18878	Ancylostoma caninum	ANCCAN_18878	I
ANCDUO_21609	Ancylostoma duodenale	ANCDUO_21609	I
ASIM_0001398401	Anisakis simplex	ASIM_0001398401	N
Bm6553	Brugia malayi	Bm6553	N
BXY_0367500	Bursaphelenchus xylophilus	BXY_0367500	N
CBG05538	Caenorhabditis briggsae	CBG05538	I
CGOC_0000345301	Cylicostephanus goldi	CGOC_0000345301	I
CRE21236	Caenorhabditis remanei	CRE21236	I
DME_0000033301	Dracunculus medinensis	DME_0000033301	N
Hba_18627	Heterorhabditis bacteriophora	Hba_18627	I
HPBE_0001384101	Heligmosomoides bakeri	HPBE_0001384101	N
L889_g9935	Steinernema feltiae	L889_g9935	N
L892_g11291	Steinernema scapterisci	L892_g11291	N
L893_g17711	Steinernema glaseri	L893_g17711	N
L898_g18025	Steinernema monticolum	L898_g18025	N
MhA1_Contig468.frz3.gene12	Meloidogyne hapla	MhA1_Contig468.frz3.gene12	N
Minc03820	Meloidogyne incognita	Minc03820	N
nAv.1.0.1.g02361	Acanthocheilonema viteae	nAv.1.0.1.g02361	N
NBR_0001584001	Nippostrongylus brasiliensis	NBR_0001584001	N
NBR_0002149901	Nippostrongylus brasiliensis	NBR_0002149901	N
nDi.2.2.2.g11238	Dirofilaria immitis	nDi.2.2.2.g11238	I
NECAME_08042	Necator americanus	NECAME_08042	N
nLs.2.1.2.g08792	Litomosoides sigmodontis	nLs.2.1.2.g08792	N
OESDEN_01522	Oesophagostomum dentatum	OESDEN_01522	N
OFLC_0000276401	Onchocerca flexuosa	OFLC_0000276401	N
PPA12559	Pristionchus pacificus	PPA12559	N
PTRK_0001041600	Parastrongyloides trichosuri	PTRK_0001041600	N
RSKR_0000031900	Rhabditophanes kr3021	RSKR_0000031900	N
SPAL_0000348500	Strongyloides papillosus	SPAL_0000348500	N
SVE_0177100	Strongyloides venezuelensis	SVE_0177100	N
TCLT_0000958101	Thelazia callipaeda	TCLT_0000958101	N
WBGene00242919	Onchocerca volvulus	WBGene00242919	N
WUBG_06876	Wuchereria bancrofti	WUBG_06876	N

GK25373 (Drosophila willistoni) Runt

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

338 Related TFs

GK25373 **(Drosophila willistoni)
Runt**