Ocbimv22002042m.g (Octopus bimaculoides)
Runt

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00853 (Runt) IPR013524 Ocbimv22002042m.g T319677_2.00 JGI:Metazome (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RUNX3
M03464_2.00 		Homo sapiens
HRACCGCAAACCRCAN
NTGYGGTTTGCGGTYD		 SELEX
Jolma et al.(2013)
RUNX3_1 		0.735 0.735
RUNX3
M03465_2.00 		Homo sapiens
WAACCRCARN
NYTGYGGTTW		 SELEX
Jolma et al.(2013)
RUNX3_2 		0.735 0.735
RUNX3
M03466_2.00 		Homo sapiens
HDACCRCADWAACCRCRN
NYGYGGTTWHTGYGGTHD		 SELEX
Jolma et al.(2013)
RUNX3_3 		0.735 0.735
RUNX3
M03467_2.00 		Homo sapiens
HRACCRCAAH
DTTGYGGTYD		 SELEX
Jolma et al.(2013)
RUNX3_4 		0.735 0.735
RUNX3
M02751_2.00 		Homo sapiens
WACCRCAM
KTGYGGTW		 SELEX
Jolma et al.(2010)
RUNX3_monomer 		0.735 0.735
RUNX3
M05731_2.00 		Homo sapiens
YWAACCGCAAAAACCGCARV
BYTGCGGTTTTTGCGGTTWR		 SELEX
Yin et al.(2017)
RUNX3_FL_HT-SELEX 		0.735 0.735
Runx1
M08163_2.00 		Mus musculus
HRRCCACARVN
NBYTGTGGYYD		 ChIP-seq
Mathelier et al.(2014)
MA0002.2 		0.735 0.735
RUNX1
M09371_2.00 		Homo sapiens
NWAACCACARV
BYTGTGGTTWN		 Misc
Kulakovskiy et al.(2013)
RUNX1_HUMAN.H11MO.0.A 		0.735 0.735
RUNX3
M09369_2.00 		Homo sapiens
HAACCACARN
NYTGTGGTTD		 Misc
Kulakovskiy et al.(2013)
RUNX3_HUMAN.H11MO.0.A 		0.735 0.735
Runx1
M09372_2.00 		Mus musculus
VWRACCACARVV
BBYTGTGGTYWB		 Misc
Kulakovskiy et al.(2013)
RUNX1_MOUSE.H11MO.0.A 		0.735 0.735
Runx3
M09374_2.00 		Mus musculus
NHRACCACARVN
NBYTGTGGTYDN		 Misc
Kulakovskiy et al.(2013)
RUNX3_MOUSE.H11MO.0.A 		0.735 0.735
RUNX1
M09632_2.00 		Homo sapiens
HAACCACADV
BHTGTGGTTD		 Misc
Heinz et al.(2010)
Jurkat-RUNX1_GSE29180 		0.735 0.735
RUNX1
M09631_2.00 		Homo sapiens
VCCACWTCCTBY
RVAGGAWGTGGB		 Misc
Heinz et al.(2010)
Jurkat-RUNX1_GSE17954 		0.735 0.735
Runx1
M09633_2.00 		Mus musculus
NWAACCACAR
YTGTGGTTWN		 Misc
Heinz et al.(2010)
HPC7-Runx1_GSE22178 		0.735 0.735
RUNX1
M11258_2.00 		Homo sapiens
ACCRCA
TGYGGT		 Transfac
Matys et al.(2006)
V$AML1_01 		0.735 0.735
RUNX1
M11259_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q4_01 		0.735 0.735
RUNX1
M11260_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q4_02 		0.735 0.735
RUNX1
M11261_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q4 		0.735 0.735
RUNX1
M11262_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q5 		0.735 0.735
RUNX1
M11263_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q6 		0.735 0.735
RUNX3
M11252_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML2_Q3_01 		0.735 0.735
RUNX3
M11253_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML2_Q3 		0.735 0.735
RUNX3
M11254_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML2_Q4 		0.735 0.735
RUNX3
M05732_2.00 		Homo sapiens
HWAACCACRAAAACCACRARN
NYTYGTGGTTTTYGTGGTTWD		 SELEX
Yin et al.(2017)
RUNX3_FL_Methyl-HT-SELEX 		0.735 0.735
Runx2
M01307_2.00 		Mus musculus
NHDACCRCAN
NTGYGGTHDN		 PBM
Lambert et al.(2019)
pTH9764 		0.725 0.725
RUNX2
M03468_2.00 		Homo sapiens
HRACCGCAAACCRCRD
HYGYGGTTTGCGGTYD		 SELEX
Jolma et al.(2013)
RUNX2_1 		0.725 0.725
RUNX2
M03469_2.00 		Homo sapiens
HRACCRCADWWACCRCAD
HTGYGGTWWHTGYGGTYD		 SELEX
Jolma et al.(2013)
RUNX2_2 		0.725 0.725
RUNX2
M03470_2.00 		Homo sapiens
WAACCRCAR
YTGYGGTTW		 SELEX
Jolma et al.(2013)
RUNX2_3 		0.725 0.725
RUNX2
M05733_2.00 		Homo sapiens
NHRACCRCADWAACCRCAVN
NBTGYGGTTWHTGYGGTYDN		 SELEX
Yin et al.(2017)
RUNX2_eDBD_HT-SELEX 		0.725 0.725
RUNX2
M09370_2.00 		Homo sapiens
MMHAACCACAVVMH
DKBBTGTGGTTDKK		 Misc
Kulakovskiy et al.(2013)
RUNX2_HUMAN.H11MO.0.A 		0.725 0.725
Runx2
M09373_2.00 		Mus musculus
VWRACCACARVV
BBYTGTGGTYWB		 Misc
Kulakovskiy et al.(2013)
RUNX2_MOUSE.H11MO.0.A 		0.725 0.725
RUNX2
M09630_2.00 		Homo sapiens
NHVACCACANNN
NNNTGTGGTBDN		 Misc
Heinz et al.(2010)
PCa-RUNX2_GSE33889 		0.725 0.725
RUNX2
M11255_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML3_Q3 		0.725 0.725
RUNX2
M11256_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML3_Q6 		0.725 0.725
RUNX2
M11257_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$OSF2_Q6 		0.725 0.725
RUNX2
M05734_2.00 		Homo sapiens
NWAACCACRAAAACCACRRN
NYYGTGGTTTTYGTGGTTWN		 SELEX
Yin et al.(2017)
RUNX2_eDBD_Methyl-HT-SELEX 		0.725 0.725
lz
M03964_2.00 		Drosophila melanogaster
HRACCGCAAHM
KDTTGCGGTYD		 SELEX
Nitta et al.(2015)
lz_1 		0.716 0.716
lz
M03965_2.00 		Drosophila melanogaster
HVACCRCARWAACCRCAV
BTGYGGTTWYTGYGGTBD		 SELEX
Nitta et al.(2015)
lz_2 		0.716 0.716
lz
M03966_2.00 		Drosophila melanogaster
WRACCRCAWTAACCRCAA
TTGYGGTTAWTGYGGTYW		 SELEX
Nitta et al.(2015)
lz_3 		0.716 0.716
lz
M03967_2.00 		Drosophila melanogaster
HRACCGCAAAACCRCAR
YTGYGGTTTTGCGGTYD		 SELEX
Nitta et al.(2015)
lz_4 		0.716 0.716
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ocbimv22002042m.p Runt 30 132

Links

Other Runt family TFs
Other Octopus bimaculoides TFs

55 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AALB007753 Anopheles albimanus AALB007753 I 0.755
AARA011332 Anopheles arabiensis AARA011332 I 0.732
ACEP16391 Atta cephalotes ACEP16391 I 0.745
ACEP16397 Atta cephalotes ACEP16397 I 0.728
ACEP16409 Atta cephalotes ACEP16409 I 0.727
ACHR007816 Anopheles christyi ACHR007816 I 0.735
ACUA002933 Anopheles culicifacies ACUA002933 I 0.713
ACYPI007541 Acyrthosiphon pisum ACYPI007541 I 0.784
ADIR001029 Anopheles dirus ADIR001029 I 0.707
AEPI011470 Anopheles epiroticus AEPI011470 I 0.761
AFAF002111 Anopheles farauti AFAF002111 I 0.724
AFUN005474 Anopheles funestus AFUN005474 I 0.717
AFUN010424 Anopheles funestus AFUN010424 I 0.717
AMEC011614 Anopheles melas AMEC011614 I 0.702
AQUA008686 Anopheles quadriannulatus AQUA008686 I 0.747
ASIS002518 Anopheles sinensis ASIS002518 I 0.755
BGIBMGA008970 Bombyx mori BGIBMGA008970 I 0.713
CLEC011123 Cimex lectularius CLEC011123 I 0.703
CLEC011127 Cimex lectularius CLEC011127 I 0.716
CPIJ006369 Culex quinquefasciatus CPIJ006369 I 0.758
CPIJ006372 Culex quinquefasciatus CPIJ006372 I 0.722
CPIJ016826 Culex quinquefasciatus CPIJ016826 I 0.758
CpipJ_CPIJ006369 Culex pipiens CpipJ_CPIJ006369 I 0.758
CpipJ_CPIJ006372 Culex pipiens CpipJ_CPIJ006372 I 0.722
CpipJ_CPIJ016826 Culex pipiens CpipJ_CPIJ016826 I 0.758
ENSLACG00000013776 Latimeria chalumnae ENSLACG00000013776 I 0.735
ENSSHAG00000014782 Sarcophilus harrisii ENSSHAG00000014782 I 0.725
ENSSSCG00000025261 Sus scrofa ENSSSCG00000025261 I 0.714
ENSTRUG00000017865 Takifugu rubripes ENSTRUG00000017865 I 0.775
Gfo_R015914 Geospiza fortis Gfo_R015914 I 0.745
GI15484 Drosophila mojavensis FBgn0138233 I 0.742
HMEL009843 Heliconius melpomene HMEL009843 I 0.768
ISCW023333 Ixodes scapularis ISCW023333 I 0.764
KGM_02818 Danaus plexippus KGM_02818 I 0.735
LCUP002652 Lucilia cuprina LCUP002652 I 0.766
LCUP002657 Lucilia cuprina LCUP002657 I 0.719
LDEC003023 Leptinotarsa decemlineata LDEC003023 I 0.705
LDEC006650 Leptinotarsa decemlineata LDEC006650 I 0.700
LDEC020505 Leptinotarsa decemlineata LDEC020505 I 0.710
LLOJ002049 Lutzomyia longipalpis LLOJ002049 I 0.727
MESCA007079 Megaselia scalaris MESCA007079 I 0.756
PPAI010985 Phlebotomus papatasi PPAI010985 I 0.722
RPRC000026 Rhodnius prolixus RPRC000026 I 0.766
RUNX1 Pteropus vampyrus ENSPVAG00000001606 I 0.725
Runx1 Mus musculus ENSMUSG00000022952 D 0.710
RUNX1 Monodelphis domestica ENSMODG00000021051 I 0.725
RUNX1 Homo sapiens ENSG00000159216 D 0.724
runx1 Danio rerio ENSDARG00000087646 I 0.723
RUNX2 Pteropus vampyrus ENSPVAG00000001720 I 0.739
Runx2 Mus musculus ENSMUSG00000039153 D 0.725
RUNX2 Homo sapiens ENSG00000124813 D 0.725
SBAD_0000678401 Soboliphyme baturini SBAD_0000678401 N 0.710
SINV13345 Solenopsis invicta SINV13345 I 0.772
SMAR009403 Strigamia maritima SMAR009403 I 0.837
TC006536 Tribolium castaneum TC006536 I 0.745