CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

ACHR007816 *(Anopheles christyi)* Runt
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF00853 (Runt)	IPR013524	ACHR007816	T319730_2.00	Vectorbase (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
RUNX3 M03464_2.00	Homo sapiens	HRACCGCAAACCRCAN	NTGYGGTTTGCGGTYD	SELEX Jolma et al.(2013) RUNX3_1	0.755	0.755
RUNX3 M03465_2.00	Homo sapiens	WAACCRCARN	NYTGYGGTTW	SELEX Jolma et al.(2013) RUNX3_2	0.755	0.755
RUNX3 M03466_2.00	Homo sapiens	HDACCRCADWAACCRCRN	NYGYGGTTWHTGYGGTHD	SELEX Jolma et al.(2013) RUNX3_3	0.755	0.755
RUNX3 M03467_2.00	Homo sapiens	HRACCRCAAH	DTTGYGGTYD	SELEX Jolma et al.(2013) RUNX3_4	0.755	0.755
RUNX3 M02751_2.00	Homo sapiens	WACCRCAM	KTGYGGTW	SELEX Jolma et al.(2010) RUNX3_monomer	0.755	0.755
RUNX3 M05731_2.00	Homo sapiens	YWAACCGCAAAAACCGCARV	BYTGCGGTTTTTGCGGTTWR	SELEX Yin et al.(2017) RUNX3_FL_HT-SELEX	0.755	0.755
RUNX3 M09369_2.00	Homo sapiens	HAACCACARN	NYTGTGGTTD	Misc Kulakovskiy et al.(2013) RUNX3_HUMAN.H11MO.0.A	0.755	0.755
Runx3 M09374_2.00	Mus musculus	NHRACCACARVN	NBYTGTGGTYDN	Misc Kulakovskiy et al.(2013) RUNX3_MOUSE.H11MO.0.A	0.755	0.755
RUNX3 M11252_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$AML2_Q3_01	0.755	0.755
RUNX3 M11253_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$AML2_Q3	0.755	0.755
RUNX3 M11254_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$AML2_Q4	0.755	0.755
RUNX3 M05732_2.00	Homo sapiens	HWAACCACRAAAACCACRARN	NYTYGTGGTTTTYGTGGTTWD	SELEX Yin et al.(2017) RUNX3_FL_Methyl-HT-SELEX	0.755	0.755
Runx1 M08163_2.00	Mus musculus	HRRCCACARVN	NBYTGTGGYYD	ChIP-seq Mathelier et al.(2014) MA0002.2	0.745	0.745
RUNX1 M09371_2.00	Homo sapiens	NWAACCACARV	BYTGTGGTTWN	Misc Kulakovskiy et al.(2013) RUNX1_HUMAN.H11MO.0.A	0.745	0.745
Runx1 M09372_2.00	Mus musculus	VWRACCACARVV	BBYTGTGGTYWB	Misc Kulakovskiy et al.(2013) RUNX1_MOUSE.H11MO.0.A	0.745	0.745
RUNX1 M09632_2.00	Homo sapiens	HAACCACADV	BHTGTGGTTD	Misc Heinz et al.(2010) Jurkat-RUNX1_GSE29180	0.745	0.745
RUNX1 M09631_2.00	Homo sapiens	VCCACWTCCTBY	RVAGGAWGTGGB	Misc Heinz et al.(2010) Jurkat-RUNX1_GSE17954	0.745	0.745
Runx1 M09633_2.00	Mus musculus	NWAACCACAR	YTGTGGTTWN	Misc Heinz et al.(2010) HPC7-Runx1_GSE22178	0.745	0.745
RUNX1 M11258_2.00	Homo sapiens	ACCRCA	TGYGGT	Transfac Matys et al.(2006) V$AML1_01	0.745	0.745
RUNX1 M11259_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$AML1_Q4_01	0.745	0.745
RUNX1 M11260_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$AML1_Q4_02	0.745	0.745
RUNX1 M11261_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$AML1_Q4	0.745	0.745
RUNX1 M11262_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$AML1_Q5	0.745	0.745
RUNX1 M11263_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$AML1_Q6	0.745	0.745
Runx2 M01307_2.00	Mus musculus	NHDACCRCAN	NTGYGGTHDN	PBM Lambert et al.(2019) pTH9764	0.724	0.724
RUNX2 M03468_2.00	Homo sapiens	HRACCGCAAACCRCRD	HYGYGGTTTGCGGTYD	SELEX Jolma et al.(2013) RUNX2_1	0.724	0.724
RUNX2 M03469_2.00	Homo sapiens	HRACCRCADWWACCRCAD	HTGYGGTWWHTGYGGTYD	SELEX Jolma et al.(2013) RUNX2_2	0.724	0.724
RUNX2 M03470_2.00	Homo sapiens	WAACCRCAR	YTGYGGTTW	SELEX Jolma et al.(2013) RUNX2_3	0.724	0.724
RUNX2 M05733_2.00	Homo sapiens	NHRACCRCADWAACCRCAVN	NBTGYGGTTWHTGYGGTYDN	SELEX Yin et al.(2017) RUNX2_eDBD_HT-SELEX	0.724	0.724
RUNX2 M09370_2.00	Homo sapiens	MMHAACCACAVVMH	DKBBTGTGGTTDKK	Misc Kulakovskiy et al.(2013) RUNX2_HUMAN.H11MO.0.A	0.724	0.724
Runx2 M09373_2.00	Mus musculus	VWRACCACARVV	BBYTGTGGTYWB	Misc Kulakovskiy et al.(2013) RUNX2_MOUSE.H11MO.0.A	0.724	0.724
RUNX2 M09630_2.00	Homo sapiens	NHVACCACANNN	NNNTGTGGTBDN	Misc Heinz et al.(2010) PCa-RUNX2_GSE33889	0.724	0.724
RUNX2 M11255_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$AML3_Q3	0.724	0.724
RUNX2 M11256_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$AML3_Q6	0.724	0.724
RUNX2 M11257_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$OSF2_Q6	0.724	0.724
RUNX2 M05734_2.00	Homo sapiens	NWAACCACRAAAACCACRRN	NYYGTGGTTTTYGTGGTTWN	SELEX Yin et al.(2017) RUNX2_eDBD_Methyl-HT-SELEX	0.724	0.724
lz M03964_2.00	Drosophila melanogaster	HRACCGCAAHM	KDTTGCGGTYD	SELEX Nitta et al.(2015) lz_1	0.714	0.714
lz M03965_2.00	Drosophila melanogaster	HVACCRCARWAACCRCAV	BTGYGGTTWYTGYGGTBD	SELEX Nitta et al.(2015) lz_2	0.714	0.714
lz M03966_2.00	Drosophila melanogaster	WRACCRCAWTAACCRCAA	TTGYGGTTAWTGYGGTYW	SELEX Nitta et al.(2015) lz_3	0.714	0.714
lz M03967_2.00	Drosophila melanogaster	HRACCGCAAAACCRCAR	YTGYGGTTTTGCGGTYD	SELEX Nitta et al.(2015) lz_4	0.714	0.714
For this family, TFs with SR scores > 0.700* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
ACHR007816-PA	Runt	147	244	LGDFLSEHPGELIRTGSPLFVCTVLPPHWRSNKTLPVAFKVVALGDVGDGTMVTVRAGNDENYCAELRNCTAVMKNQVAKFNDLRFVGRSGRGKYMFF

Links
Other Runt family TFs
Other *Anopheles christyi* TFs

108 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
28779.m000140	Ricinus communis	28779.m000140	I	0.000
Aquca_027_00443	Aquilegia coerulea	Aquca_027_00443	I	0.000
AT1G19490	Arabidopsis thaliana	AT1G19490	D	0.000
Bo5g027510	Brassica oleracea	Bo5g027510	I	0.000
Bostr.7128s0552	Boechera stricta	Bostr.7128s0552	I	0.000
Bra025743	Brassica rapa	Bra025743	I	0.000
Cagra.1961s0053	Capsella grandiflora	Cagra.1961s0053	I	0.000
Carubv10011417m.g	Capsella rubella	Carubv10011417m.g	I	0.000
cassava31755.valid.m1	Manihot esculenta	cassava31755.valid.m1	I	0.000
Ca_00780	Cicer arietinum	Ca_00780	I	0.000
Ciclev10013541m.g	Citrus clementina	Ciclev10013541m.g	I	0.000
Cla017983	Citrullus lanatus	Cla017983	I	0.000
Cucsa.240980	Cucumis sativus	Cucsa.240980	I	0.000
evm.TU.supercontig_5.51	Carica papaya	evm.TU.supercontig_5.51	I	0.000
gene30252-v1.0-hybrid	Fragaria vesca	gene30252-v1.0-hybrid	I	0.000
GLYMA03G35101	Glycine max	GLYMA03G35101	I	0.000
GLYMA19G37801	Glycine max	GLYMA19G37801	I	0.000
Gorai.009G405400	Gossypium raimondii	Gorai.009G405400	I	0.000
GSMUA_Achr5G17460_001	Musa acuminata	GSMUA_Achr5G17460_001	N	0.000
GSMUA_Achr9G02570_001	Musa acuminata	GSMUA_Achr9G02570_001	N	0.000
Lus10003255.g	Linum usitatissimum	Lus10003255.g	I	0.000
Lus10035597.g	Linum usitatissimum	Lus10035597.g	I	0.000
MDP0000121603	Malus domestica	MDP0000121603	N	0.000
MDP0000147745	Malus domestica	MDP0000147745	I	0.000
MDP0000203904	Malus domestica	MDP0000203904	I	0.000
MDP0000374836	Malus domestica	MDP0000374836	N	0.000
MTR_7g104190	Medicago truncatula	MTR_7g104190	I	0.000
orange1.1g011345m.g	Citrus sinensis	orange1.1g011345m.g	I	0.000
PK09783.1	Cannabis sativa	PK09783.1	I	0.000
POPTR_0006s11550	Populus trichocarpa	POPTR_0006s11550	I	0.000
PRUPE_ppa003901mg	Prunus persica	PRUPE_ppa003901mg	I	0.000
SapurV1A.0208s0130	Salix purpurea	SapurV1A.0208s0130	I	0.000
Solyc09g009760.1	Solanum lycopersicum	Solyc09g009760.1	I	0.000
TCM_022516	Theobroma cacao	TCM_022516	I	0.000
Thhalv10009681m.g	Eutrema salsugineum	Thhalv10009681m.g	I	0.000
VIT_08s0007g03640	Vitis vinifera	VIT_08s0007g03640	I	0.000

ACHR007816 (Anopheles christyi) Runt

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

108 Related TFs

ACHR007816 **(Anopheles christyi)
Runt**