ACYPI003084 (Acyrthosiphon pisum)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 ACYPI003084 T326326_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Tcf7l2
M00198_2.00 		Mus musculus
NSWTCAAAVN
NBTTTGAWSN		 PBM
Badis et al.(2009)
Tcf7l2_3461 		0.707 0.942
Tcf7l2
M02646_2.00 		Mus musculus
SATCAAAGN
NCTTTGATS		 SELEX
Hallikas et al.(2006)
Tcf4 		0.707 0.942
TCF7L2
M08167_2.00 		Homo sapiens
NVASWTCAAAGVVN
NBBCTTTGAWSTBN		 ChIP-seq
Mathelier et al.(2014)
MA0523.1 		0.707 0.942
TCF7L2
M09393_2.00 		Homo sapiens
DGCAGSTGKS
SMCASCTGCH		 Misc
Kulakovskiy et al.(2013)
ITF2_HUMAN.H11MO.0.C 		0.707 0.942
TCF7L2
M09394_2.00 		Homo sapiens
VVASWTCAAAGVV
BBCTTTGAWSTBB		 Misc
Kulakovskiy et al.(2013)
TF7L2_HUMAN.H11MO.0.A 		0.707 0.942
Tcf7l2
M09401_2.00 		Mus musculus
VVASWTCAAAGVV
BBCTTTGAWSTBB		 Misc
Kulakovskiy et al.(2013)
TF7L2_MOUSE.H11MO.0.A 		0.707 0.942
TCF7L2
M09638_2.00 		Homo sapiens
CCTTTGAWST
ASWTCAAAGG		 Misc
Heinz et al.(2010)
K562-TCF7L2_GSE29196 		0.707 0.942
TCF7L2
M11316_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TCF4_Q5_01 		0.707 0.942
TCF7L2
M11317_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TCF4_Q5_02 		0.707 0.942
TCF7L2
M11318_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TCF4_Q5 		0.707 0.942
TCF7L2
M11319_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TCF7L2_06 		0.707 0.942
Lef1
M00200_2.00 		Mus musculus
NSWTCAAAVN
NBTTTGAWSN		 PBM
Badis et al.(2009)
Lef1_3504 		0.707 0.928
LEF1
M03511_2.00 		Homo sapiens
NRAGATCAAAGRVWW
WWBYCTTTGATCTYN		 SELEX
Jolma et al.(2013)
LEF1_1 		0.707 0.928
LEF1
M05771_2.00 		Homo sapiens
NSATCAAAS
STTTGATSN		 SELEX
Yin et al.(2017)
LEF1_eDBD_HT-SELEX_1 		0.707 0.928
LEF1
M05772_2.00 		Homo sapiens
WCATCGRGRCGCTGW
WCAGCGYCYCGATGW		 SELEX
Yin et al.(2017)
LEF1_eDBD_HT-SELEX_2 		0.707 0.928
LEF1
M05775_2.00 		Homo sapiens
ASATCAAAG
CTTTGATST		 SELEX
Yin et al.(2017)
LEF1_FL_HT-SELEX_1 		0.707 0.928
LEF1
M05776_2.00 		Homo sapiens
ACATCGRGRCGCTGW
WCAGCGYCYCGATGT		 SELEX
Yin et al.(2017)
LEF1_FL_HT-SELEX_2 		0.707 0.928
LEF1
M05895_2.00 		Homo sapiens
WTCAAAGNNN
NNNCTTTGAW		 SMiLE-seq
Isakova et al.(2017)
LEF1 		0.707 0.928
LEF1
M09392_2.00 		Homo sapiens
BSYTTTSWNNTBYH
DRVANNWSAAARSV		 Misc
Kulakovskiy et al.(2013)
LEF1_HUMAN.H11MO.0.A 		0.707 0.928
Lef1
M09402_2.00 		Mus musculus
BSYTTTSWNNTBYH
DRVANNWSAAARSV		 Misc
Kulakovskiy et al.(2013)
LEF1_MOUSE.H11MO.0.B 		0.707 0.928
LEF1
M11311_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$LEF1_Q2_01 		0.707 0.928
LEF1
M11312_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$LEF1_Q3 		0.707 0.928
LEF1
M11313_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$LEF1_Q4 		0.707 0.928
LEF1
M11314_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$LEF1_Q5_01 		0.707 0.928
LEF1
M11315_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$LEF1_Q5 		0.707 0.928
LEF1
M05773_2.00 		Homo sapiens
ASATCAAAG
CTTTGATST		 SELEX
Yin et al.(2017)
LEF1_eDBD_Methyl-HT-SELEX_1 		0.707 0.928
LEF1
M05774_2.00 		Homo sapiens
WCATCGRGGCGCTGW
WCAGCGCCYCGATGW		 SELEX
Yin et al.(2017)
LEF1_eDBD_Methyl-HT-SELEX_2 		0.707 0.928
LEF1
M05777_2.00 		Homo sapiens
ASATCAAAG
CTTTGATST		 SELEX
Yin et al.(2017)
LEF1_FL_Methyl-HT-SELEX_1 		0.707 0.928
LEF1
M05778_2.00 		Homo sapiens
ACATCGRGRCGCTGW
WCAGCGYCYCGATGT		 SELEX
Yin et al.(2017)
LEF1_FL_Methyl-HT-SELEX_2 		0.707 0.928
Tcf7l1
M00207_2.00 		Mus musculus
NNNNWWDN
NHWWNNNN		 PBM
Badis et al.(2009)
Tcf3_3787 		0.707 0.884
TCF7L1
M03512_2.00 		Homo sapiens
AAAGATCAAAGG
CCTTTGATCTTT		 SELEX
Jolma et al.(2013)
TCF7L1_1 		0.707 0.884
TCF7L1
M05779_2.00 		Homo sapiens
RSATCAAAG
CTTTGATSY		 SELEX
Yin et al.(2017)
TCF7L1_eDBD_HT-SELEX_1 		0.707 0.884
TCF7L1
M05780_2.00 		Homo sapiens
ACATCGRGRCGCTGW
WCAGCGYCYCGATGT		 SELEX
Yin et al.(2017)
TCF7L1_eDBD_HT-SELEX_2 		0.707 0.884
TCF7L1
M09395_2.00 		Homo sapiens
NBBCTTTGAWSTB
VASWTCAAAGVVN		 Misc
Kulakovskiy et al.(2013)
TF7L1_HUMAN.H11MO.0.B 		0.707 0.884
Tcf7l1
M09406_2.00 		Mus musculus
BBCTTTGAWST
ASWTCAAAGVV		 Misc
Kulakovskiy et al.(2013)
TF7L1_MOUSE.H11MO.0.A 		0.707 0.884
Tcf7l1
M09407_2.00 		Mus musculus
NDGCAGSTGBB
VVCASCTGCHN		 Misc
Kulakovskiy et al.(2013)
TFE2_MOUSE.H11MO.0.A 		0.707 0.884
TCF7L1
M11320_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TCF3_01 		0.707 0.884
TCF7L1
M11321_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TCF3_Q6_01 		0.707 0.884
TCF7L1
M11322_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TCF3_Q6 		0.707 0.884
TCF7L1
M05781_2.00 		Homo sapiens
CTTTGATSY
RSATCAAAG		 SELEX
Yin et al.(2017)
TCF7L1_eDBD_Methyl-HT-SELEX_1 		0.707 0.884
TCF7L1
M05782_2.00 		Homo sapiens
ACATCGRGRCGCTGW
WCAGCGYCYCGATGT		 SELEX
Yin et al.(2017)
TCF7L1_eDBD_Methyl-HT-SELEX_2 		0.707 0.884
pan
M06451_2.00 		Drosophila melanogaster
DWYCAAAD
HTTTGRWH		 B1H
Zhu et al.(2011)
pan_FlyReg_FBgn0085432 		0.686 0.884
pan
M08428_2.00 		Drosophila melanogaster
WHNAAAVRNRSCGM
KCGSYNYBTTTNDW		 ChIP-chip
Mathelier et al.(2014)
MA0237.2 		0.686 0.884
pan
M11337_2.00 		Drosophila melanogaster
AAGATCAAAGG
CCTTTGATCTT		 Transfac
Matys et al.(2006)
I$TCF_1 		0.686 0.884
pan
M11338_2.00 		Drosophila melanogaster Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
I$TCF_Q6 		0.686 0.884
Tcf7
M00193_2.00 		Mus musculus
HNHNNNNNN
NNNNNNDND		 PBM
Badis et al.(2009)
Tcf7_0950 		0.682 0.928
Tcf7
M03532_2.00 		Mus musculus
AAASATCAAAGV
BCTTTGATSTTT		 SELEX
Jolma et al.(2013)
Tcf7_1 		0.682 0.928
TCF7
M05755_2.00 		Homo sapiens
DSATCAAWS
SWTTGATSH		 SELEX
Yin et al.(2017)
TCF7_eDBD_HT-SELEX_1 		0.682 0.928
TCF7
M05756_2.00 		Homo sapiens
WCWKCGYCYCGWTGW
WCAWCGRGRCGMWGW		 SELEX
Yin et al.(2017)
TCF7_eDBD_HT-SELEX_2 		0.682 0.928
TCF7
M05890_2.00 		Homo sapiens
NNASATCAAASNN
NNSTTTGATSTNN		 SMiLE-seq
Isakova et al.(2017)
TCF7 		0.682 0.928
TCF7
M09386_2.00 		Homo sapiens
NBBCTTTSAWSTBNBN
NVNVASWTSAAAGVVN		 Misc
Kulakovskiy et al.(2013)
TCF7_HUMAN.H11MO.0.A 		0.682 0.928
Tcf7
M09400_2.00 		Mus musculus
VVRVADSAAARVVVNV
BNBBBYTTTSHTBYBB		 Misc
Kulakovskiy et al.(2013)
TCF7_MOUSE.H11MO.0.A 		0.682 0.928
TCF7
M11294_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TCF1_Q5_01 		0.682 0.928
TCF7
M11295_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TCF1_Q5 		0.682 0.928
TCF7
M05757_2.00 		Homo sapiens
RSATCAAAS
STTTGATSY		 SELEX
Yin et al.(2017)
TCF7_eDBD_Methyl-HT-SELEX_1 		0.682 0.928
TCF7
M05758_2.00 		Homo sapiens
WCAWCGRGRCGMWGW
WCWKCGYCYCGWTGW		 SELEX
Yin et al.(2017)
TCF7_eDBD_Methyl-HT-SELEX_2 		0.682 0.928
pop-1
M00712_2.00 		Caenorhabditis elegans
NNHDWVNNNN
NNNNBWHDNN		 PBM
Narasimhan et al.(2015)
pTH9135 		0.508 0.522
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ACYPI003084-PA Sox 307 375

Links

Other Sox family TFs
Other Acyrthosiphon pisum TFs

509 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29584.m000234 Ricinus communis 29584.m000234 I
AC233933.1_FG001 Zea mays AC233933.1_FG001 I
BGIOSGA024428 Oryza indica BGIOSGA024428 I
BGIOSGA024429 Oryza indica BGIOSGA024429 I
BGIOSGA031313 Oryza indica BGIOSGA031313 I
BRADI4G38930 Brachypodium distachyon BRADI4G38930 I
cassava37347.valid.m1 Manihot esculenta cassava37347.valid.m1 I
cassava38166.valid.m1 Manihot esculenta cassava38166.valid.m1 I
Ca_12081 Cicer arietinum Ca_12081 I
Ca_12219 Cicer arietinum Ca_12219 I
chr1.CM0295.160.nd Lotus japonicus chr1.CM0295.160.nd I
Ciclev10021622m.g Citrus clementina Ciclev10021622m.g I
Cucsa.062330 Cucumis sativus Cucsa.062330 I
F775_01237 Aegilops tauschii F775_01237 N
F775_22020 Aegilops tauschii F775_22020 I
F775_22331 Aegilops tauschii F775_22331 I
F775_22648 Aegilops tauschii F775_22648 N
F775_52314 Aegilops tauschii F775_52314 I
F775_52547 Aegilops tauschii F775_52547 N
GLYMA10G04170 Glycine max GLYMA10G04170 I
GLYMA13G18340 Glycine max GLYMA13G18340 I
GLYMA13G18350 Glycine max GLYMA13G18350 I
GLYMA13G18390 Glycine max GLYMA13G18390 I
Gorai.001G253100 Gossypium raimondii Gorai.001G253100 I
Gorai.004G057000 Gossypium raimondii Gorai.004G057000 I
Gorai.007G145800 Gossypium raimondii Gorai.007G145800 I
GRMZM2G123119 Zea mays GRMZM2G123119 I
LPERR07G06830 Leersia perrieri LPERR07G06830 I
LPERR09G16380 Leersia perrieri LPERR09G16380 I
MLOC_43207 Hordeum vulgare MLOC_43207 I
MLOC_77420 Hordeum vulgare MLOC_77420 I
MTR_1g074370 Medicago truncatula MTR_1g074370 I
MTR_7g096780 Medicago truncatula MTR_7g096780 I
MTR_7g096830 Medicago truncatula MTR_7g096830 I
OB09G27130 Oryza brachyantha OB09G27130 I
OBART07G11330 Oryza barthii OBART07G11330 I
OBART07G11340 Oryza barthii OBART07G11340 I
OBART09G20410 Oryza barthii OBART09G20410 I
OGLUM07G10870 Oryza glumaepatula OGLUM07G10870 I
OGLUM07G10880 Oryza glumaepatula OGLUM07G10880 I
OGLUM09G21150 Oryza glumaepatula OGLUM09G21150 I
OLONG_005597 Oryza longistaminata OLONG_005597 I
ONIVA01G50300 Oryza nivara ONIVA01G50300 I
ONIVA07G09500 Oryza nivara ONIVA07G09500 I
ONIVA09G20840 Oryza nivara ONIVA09G20840 I
OPUNC07G10310 Oryza punctata OPUNC07G10310 I
OPUNC09G18690 Oryza punctata OPUNC09G18690 I
orange1.1g042174m.g Citrus sinensis orange1.1g042174m.g I
ORGLA07G0097000 Oryza glaberrima ORGLA07G0097000 I
ORGLA07G0097100 Oryza glaberrima ORGLA07G0097100 I
ORUFI07G11580 Oryza rufipogon ORUFI07G11580 I
ORUFI07G11590 Oryza rufipogon ORUFI07G11590 I
ORUFI09G22040 Oryza rufipogon ORUFI09G22040 I
OS07G0410700 Oryza sativa OS07G0410700 I
OS09G0572000 Oryza sativa OS09G0572000 I
Pavir.Ba02374 Panicum virgatum Pavir.Ba02374 I
Pavir.Ba02781 Panicum virgatum Pavir.Ba02781 I
Pavir.Bb00962 Panicum virgatum Pavir.Bb00962 I
Pavir.Ha00307 Panicum virgatum Pavir.Ha00307 I
Pavir.Ha01264 Panicum virgatum Pavir.Ha01264 I
Pavir.Hb01074 Panicum virgatum Pavir.Hb01074 I
Pavir.Hb01336 Panicum virgatum Pavir.Hb01336 I
Pavir.J02630 Panicum virgatum Pavir.J02630 I
Pavir.J37124 Panicum virgatum Pavir.J37124 I
POPTR_0002s04020 Populus trichocarpa POPTR_0002s04020 I
POPTR_0005s24460 Populus trichocarpa POPTR_0005s24460 I
POPTR_0010s08300 Populus trichocarpa POPTR_0010s08300 I
SapurV1A.0006s0850 Salix purpurea SapurV1A.0006s0850 I
SapurV1A.0007s0980 Salix purpurea SapurV1A.0007s0980 I
SapurV1A.0233s0370 Salix purpurea SapurV1A.0233s0370 I
SapurV1A.2490s0030 Salix purpurea SapurV1A.2490s0030 I
Sb02g012630 Sorghum bicolor Sb02g012630 I
Sb05g026843 Sorghum bicolor Sb05g026843 I
Si027485m.g Setaria italica Si027485m.g I
Si028088m.g Setaria italica Si028088m.g I
Si028135m.g Setaria italica Si028135m.g I
Si028219m.g Setaria italica Si028219m.g I
Si031946m.g Setaria italica Si031946m.g I
Si033089m.g Setaria italica Si033089m.g I
TCM_004056 Theobroma cacao TCM_004056 I
Traes_2AL_9E90C2488 Triticum aestivum Traes_2AL_9E90C2488 N
Traes_2BL_3A3353970 Triticum aestivum Traes_2BL_3A3353970 N
Traes_2BS_0EE99D4A6 Triticum aestivum Traes_2BS_0EE99D4A6 I
Traes_4AL_1A0E673DC Triticum aestivum Traes_4AL_1A0E673DC I
Traes_4AL_5E86DF14B Triticum aestivum Traes_4AL_5E86DF14B I
Traes_4AS_9450AD3F4 Triticum aestivum Traes_4AS_9450AD3F4 I
Traes_4BL_39AE2989D Triticum aestivum Traes_4BL_39AE2989D I
Traes_4DL_CB92B5ABB Triticum aestivum Traes_4DL_CB92B5ABB I
Traes_5BL_4E044468C Triticum aestivum Traes_5BL_4E044468C I
Traes_5DL_53D8DF9CD Triticum aestivum Traes_5DL_53D8DF9CD I
TRIUR3_16508 Triticum urartu TRIUR3_16508 I