GLYMA18G19720 (Glycine max)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 GLYMA18G19720 T330296_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
YAB1
M00890_2.00 		Arabidopsis thaliana
AATAATWA
TWATTATT		 PBM
Franco-Zorrilla et al.(2014)
YAB1 		0.669 0.717
INO
M02485_2.00 		Arabidopsis thaliana
NHNNNYRNNN
NNNYRNNNDN		 PBM
Weirauch et al.(2014)
pTH7516 		0.651 0.804
YAB5
M02486_2.00 		Arabidopsis thaliana
NNNNHRN
NYDNNNN		 PBM
Weirauch et al.(2014)
pTH7575 		0.640 0.717
YAB5
M00889_2.00 		Arabidopsis thaliana
NATRATTADNNN
NNNHTAATYATN		 PBM
Franco-Zorrilla et al.(2014)
YAB5 		0.640 0.717
CRC
M07266_2.00 		Arabidopsis thaliana
TWATCATW
WATGATWA		 Dap-seq
OMalley et al.(2016)
CRC_col_a 		0.634 0.587
CRC
M07267_2.00 		Arabidopsis thaliana
GGTTAGTGTTTTGGAGTCGAATATGACTTG
CAAGTCATATTCGACTCCAAAACACTAACC		 Dap-seq
OMalley et al.(2016)
CRC_colamp_a 		0.634 0.587
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
GLYMA18G19720.2 Sox 118 163

Links

Other Sox family TFs
Other Glycine max TFs

549 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AGL82 Arabidopsis thaliana AT5G58890 N 0.000
AGL82 Arabidopsis lyrata scaffold_802501.1 N 0.000
AT5G55690 Arabidopsis thaliana AT5G55690 N 0.000
Bo3g021400 Brassica oleracea Bo3g021400 N 0.000
Bostr.26833s0357 Boechera stricta Bostr.26833s0357 N 0.000
Bostr.26833s0688 Boechera stricta Bostr.26833s0688 N 0.000
Bra002611 Brassica rapa Bra002611 N 0.000
Bra028965 Brassica rapa Bra028965 N 0.000
Cagra.0891s0086 Capsella grandiflora Cagra.0891s0086 N 0.000
Cagra.6942s0024 Capsella grandiflora Cagra.6942s0024 N 0.000
Carubv10027564m.g Capsella rubella Carubv10027564m.g N 0.000
Carubv10027979m.g Capsella rubella Carubv10027979m.g N 0.000
fgenesh1_pg.C_scaffold_8001596 Arabidopsis lyrata fgenesh1_pg.C_scaffold_8001596 N 0.000
Thhalv10015500m.g Eutrema salsugineum Thhalv10015500m.g N 0.000