Si031512m.g (Setaria italica)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 Si031512m.g T332552_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMG-1
M02720_2.00 		Pisum sativum
STYGTDHTY
RADHACRAS		 SELEX
Mathelier et al.(2014)
MA0044.1 		0.610 0.667
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Si031512m Sox 28 97
Si031541m Sox 28 97

Links

Other Sox family TFs
Other Setaria italica TFs

291 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30136.m001048 Ricinus communis 30136.m001048 N 0.000
anac103 Arabidopsis thaliana AT5G64060 D 0.000
anac103 Arabidopsis lyrata fgenesh2_kg.8__2417__AT5G64060.1 I 0.000
Aquca_022_00282 Aquilegia coerulea Aquca_022_00282 I 0.000
Bo2g009300 Brassica oleracea Bo2g009300 I 0.000
Bo3g005150 Brassica oleracea Bo3g005150 N 0.000
Bostr.0568s0398 Boechera stricta Bostr.0568s0398 I 0.000
Bra009379 Brassica rapa Bra009379 N 0.000
Bra024263 Brassica rapa Bra024263 I 0.000
Bra028640 Brassica rapa Bra028640 I 0.000
Cagra.0248s0087 Capsella grandiflora Cagra.0248s0087 I 0.000
Cagra.1365s0106 Capsella grandiflora Cagra.1365s0106 N 0.000
Carubv10001139m.g Capsella rubella Carubv10001139m.g N 0.000
Carubv10026643m.g Capsella rubella Carubv10026643m.g I 0.000
cassava2513.valid.m1 Manihot esculenta cassava2513.valid.m1 I 0.000
cassava2514.valid.m1 Manihot esculenta cassava2514.valid.m1 I 0.000
cassava2515.valid.m1 Manihot esculenta cassava2515.valid.m1 I 0.000
cassava43226.valid.m1 Manihot esculenta cassava43226.valid.m1 N 0.000
cassava43227.valid.m1 Manihot esculenta cassava43227.valid.m1 N 0.000
Ciclev10001200m.g Citrus clementina Ciclev10001200m.g N 0.000
evm.TU.supercontig_42.145 Carica papaya evm.TU.supercontig_42.145 I 0.000
gene27615-v1.0-hybrid Fragaria vesca gene27615-v1.0-hybrid N 0.000
GSMUA_Achr10G04530_001 Musa acuminata GSMUA_Achr10G04530_001 N 0.000
GSMUA_Achr11G09000_001 Musa acuminata GSMUA_Achr11G09000_001 N 0.000
GSMUA_Achr7G23330_001 Musa acuminata GSMUA_Achr7G23330_001 N 0.000
LjSGA_024981.1 Lotus japonicus LjSGA_024981.1 N 0.000
Lus10020896.g Linum usitatissimum Lus10020896.g N 0.000
NAC082 Arabidopsis thaliana AT5G09330 N 0.000
orange1.1g036240m.g Citrus sinensis orange1.1g036240m.g N 0.000
PDK_20s1369501g001 Phoenix dactylifera PDK_20s1369501g001 N 0.000
PK02804.1 Cannabis sativa PK02804.1 N 0.000
POPTR_0005s06040 Populus trichocarpa POPTR_0005s06040 N 0.000
Sb09g020880 Sorghum bicolor Sb09g020880 N 0.000
Thhalv10004501m.g Eutrema salsugineum Thhalv10004501m.g I 0.000
Thhalv10013785m.g Eutrema salsugineum Thhalv10013785m.g N 0.000
VNI1 Arabidopsis lyrata fgenesh2_kg.6__879__AT5G09330.2 N 0.000