mgf015439m (Mimulus guttatus)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 mgf015439m T334297_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMGB13
M07268_2.00 		Arabidopsis thaliana
HNHYNBNNNHDYCDCCGCCRB
VYGGCGGHGRHDNNNVNRDND		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_col_a 		0.506 0.670
HMGB13
M07269_2.00 		Arabidopsis thaliana
GGHGGHGGYGGHGGN
NCCDCCRCCDCCDCC		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_colamp_a 		0.506 0.670
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
mgf015439m Sox 179 245
mgf015439m Sox 296 362
mgf015439m Sox 423 491

Links

Other Sox family TFs
Other Mimulus guttatus TFs

61 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R002291 Calypte anna Aan_R002291 N 0.000
Afo_R013833 Aptenodytes forsteri Afo_R013833 N 0.000
ENSLACG00000003287 Latimeria chalumnae ENSLACG00000003287 N 0.000
ENSPFOG00000000918 Poecilia formosa ENSPFOG00000000918 I 0.000
Gfo_R011707 Geospiza fortis Gfo_R011707 N 0.000
PRDM6 Callithrix jacchus ENSCJAG00000017318 I 0.000
PRDM6 Procavia capensis ENSPCAG00000007467 N 0.000
PRDM6 Taeniopygia guttata ENSTGUG00000001115 N 0.000
Tal_R005602 Tyto alba Tal_R005602 N 0.000