Cagra.0605s0067 (Capsella grandiflora)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 Cagra.0605s0067 T334400_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
INO
M02485_2.00 		Arabidopsis thaliana
NHNNNYRNNN
NNNYRNNNDN		 PBM
Weirauch et al.(2014)
pTH7516 		0.697 0.956
YAB5
M02486_2.00 		Arabidopsis thaliana
NNNNHRN
NYDNNNN		 PBM
Weirauch et al.(2014)
pTH7575 		0.640 0.711
YAB5
M00889_2.00 		Arabidopsis thaliana
NATRATTADNNN
NNNHTAATYATN		 PBM
Franco-Zorrilla et al.(2014)
YAB5 		0.640 0.711
YAB1
M00890_2.00 		Arabidopsis thaliana
AATAATWA
TWATTATT		 PBM
Franco-Zorrilla et al.(2014)
YAB1 		0.640 0.711
CRC
M07266_2.00 		Arabidopsis thaliana
TWATCATW
WATGATWA		 Dap-seq
OMalley et al.(2016)
CRC_col_a 		0.604 0.600
CRC
M07267_2.00 		Arabidopsis thaliana
GGTTAGTGTTTTGGAGTCGAATATGACTTG
CAAGTCATATTCGACTCCAAAACACTAACC		 Dap-seq
OMalley et al.(2016)
CRC_colamp_a 		0.604 0.600
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.0605s0067.1.p Sox 137 181

Links

Other Sox family TFs
Other Capsella grandiflora TFs

532 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
cassava5602.m1 Manihot esculenta cassava5602.m1 N 0.000
Ciclev10016434m.g Citrus clementina Ciclev10016434m.g N 0.000
Eucgr.H03362 Eucalyptus grandis Eucgr.H03362 N 0.000
MDP0000842702 Malus domestica MDP0000842702 N 0.000
orange1.1g025990m.g Citrus sinensis orange1.1g025990m.g N 0.000
Pm016114 Prunus mume Pm016114 N 0.000
POPTR_0001s33260 Populus trichocarpa POPTR_0001s33260 N 0.000
POPTR_0017s09030 Populus trichocarpa POPTR_0017s09030 N 0.000
SapurV1A.0169s0230 Salix purpurea SapurV1A.0169s0230 N 0.000
SapurV1A.3527s0010 Salix purpurea SapurV1A.3527s0010 N 0.000