CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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POPTR_0001s33260
(
Populus trichocarpa
)
NAC/NAM
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF02365 (NAM)
IPR003441
POPTR_0001s33260
T295208_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
POPTR_0001s33260.1
NAC/NAM
15
140
PIGYRFHPTDEELVVHYLKRKVLGLPLPAAVIPEFDVFQTDPWSLPGNLKEKRYFFSQKKLNDFGTKCKRSAGYIPSGYWKPVGKGKQIVASGSNQAVGIRKTLVFRERNHSSKTRTQWVMHEYCL
Links
Other
NAC/NAM
family TFs
Other
Populus trichocarpa
TFs
11 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
SapurV1A.0123s0250
Salix purpurea
SapurV1A.0123s0250
N
0.965
POPTR_0017s09030
Populus trichocarpa
POPTR_0017s09030
N
0.953
SapurV1A.0169s0230
Salix purpurea
SapurV1A.0169s0230
N
0.924
SapurV1A.3527s0010
Salix purpurea
SapurV1A.3527s0010
N
0.924
Eucgr.H03362
Eucalyptus grandis
Eucgr.H03362
N
0.911
Ciclev10016434m.g
Citrus clementina
Ciclev10016434m.g
N
0.895
orange1.1g025990m.g
Citrus sinensis
orange1.1g025990m.g
N
0.895
MDP0000842702
Malus domestica
MDP0000842702
N
0.894
Pm016114
Prunus mume
Pm016114
N
0.881
cassava5602.m1
Manihot esculenta
cassava5602.m1
N
0.874
cassava37235.valid.m1
Manihot esculenta
cassava37235.valid.m1
N
0.872