CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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HNAJ_0001324301
(
Hymenolepis nana
)
Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00505 (HMG_box)
IPR000910
HNAJ_0001324301
T336458_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Tcf7l1
M00207_2.00
Mus musculus
NNNNWWDN
NHWWNNNN
PBM
Badis et al.(2009)
Tcf3_3787
0.668
0.826
TCF7L1
M03512_2.00
Homo sapiens
AAAGATCAAAGG
CCTTTGATCTTT
SELEX
Jolma et al.(2013)
TCF7L1_1
0.668
0.826
TCF7L1
M05779_2.00
Homo sapiens
RSATCAAAG
CTTTGATSY
SELEX
Yin et al.(2017)
TCF7L1_eDBD_HT-SELEX_1
0.668
0.826
TCF7L1
M05780_2.00
Homo sapiens
ACATCGRGRCGCTGW
WCAGCGYCYCGATGT
SELEX
Yin et al.(2017)
TCF7L1_eDBD_HT-SELEX_2
0.668
0.826
TCF7L1
M09395_2.00
Homo sapiens
NBBCTTTGAWSTB
VASWTCAAAGVVN
Misc
Kulakovskiy et al.(2013)
TF7L1_HUMAN.H11MO.0.B
0.668
0.826
Tcf7l1
M09406_2.00
Mus musculus
BBCTTTGAWST
ASWTCAAAGVV
Misc
Kulakovskiy et al.(2013)
TF7L1_MOUSE.H11MO.0.A
0.668
0.826
Tcf7l1
M09407_2.00
Mus musculus
NDGCAGSTGBB
VVCASCTGCHN
Misc
Kulakovskiy et al.(2013)
TFE2_MOUSE.H11MO.0.A
0.668
0.826
TCF7L1
M11320_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TCF3_01
0.668
0.826
TCF7L1
M11321_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TCF3_Q6_01
0.668
0.826
TCF7L1
M11322_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TCF3_Q6
0.668
0.826
TCF7L1
M05781_2.00
Homo sapiens
CTTTGATSY
RSATCAAAG
SELEX
Yin et al.(2017)
TCF7L1_eDBD_Methyl-HT-SELEX_1
0.668
0.826
TCF7L1
M05782_2.00
Homo sapiens
ACATCGRGRCGCTGW
WCAGCGYCYCGATGT
SELEX
Yin et al.(2017)
TCF7L1_eDBD_Methyl-HT-SELEX_2
0.668
0.826
Tcf7l2
M00198_2.00
Mus musculus
NSWTCAAAVN
NBTTTGAWSN
PBM
Badis et al.(2009)
Tcf7l2_3461
0.667
0.826
Tcf7l2
M02646_2.00
Mus musculus
SATCAAAGN
NCTTTGATS
SELEX
Hallikas et al.(2006)
Tcf4
0.667
0.826
TCF7L2
M08167_2.00
Homo sapiens
NVASWTCAAAGVVN
NBBCTTTGAWSTBN
ChIP-seq
Mathelier et al.(2014)
MA0523.1
0.667
0.826
TCF7L2
M09393_2.00
Homo sapiens
DGCAGSTGKS
SMCASCTGCH
Misc
Kulakovskiy et al.(2013)
ITF2_HUMAN.H11MO.0.C
0.667
0.826
TCF7L2
M09394_2.00
Homo sapiens
VVASWTCAAAGVV
BBCTTTGAWSTBB
Misc
Kulakovskiy et al.(2013)
TF7L2_HUMAN.H11MO.0.A
0.667
0.826
Tcf7l2
M09401_2.00
Mus musculus
VVASWTCAAAGVV
BBCTTTGAWSTBB
Misc
Kulakovskiy et al.(2013)
TF7L2_MOUSE.H11MO.0.A
0.667
0.826
TCF7L2
M09638_2.00
Homo sapiens
CCTTTGAWST
ASWTCAAAGG
Misc
Heinz et al.(2010)
K562-TCF7L2_GSE29196
0.667
0.826
TCF7L2
M11316_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TCF4_Q5_01
0.667
0.826
TCF7L2
M11317_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TCF4_Q5_02
0.667
0.826
TCF7L2
M11318_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TCF4_Q5
0.667
0.826
TCF7L2
M11319_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TCF7L2_06
0.667
0.826
Lef1
M00200_2.00
Mus musculus
NSWTCAAAVN
NBTTTGAWSN
PBM
Badis et al.(2009)
Lef1_3504
0.667
0.812
LEF1
M03511_2.00
Homo sapiens
NRAGATCAAAGRVWW
WWBYCTTTGATCTYN
SELEX
Jolma et al.(2013)
LEF1_1
0.667
0.812
LEF1
M05771_2.00
Homo sapiens
NSATCAAAS
STTTGATSN
SELEX
Yin et al.(2017)
LEF1_eDBD_HT-SELEX_1
0.667
0.812
LEF1
M05772_2.00
Homo sapiens
WCATCGRGRCGCTGW
WCAGCGYCYCGATGW
SELEX
Yin et al.(2017)
LEF1_eDBD_HT-SELEX_2
0.667
0.812
LEF1
M05775_2.00
Homo sapiens
ASATCAAAG
CTTTGATST
SELEX
Yin et al.(2017)
LEF1_FL_HT-SELEX_1
0.667
0.812
LEF1
M05776_2.00
Homo sapiens
ACATCGRGRCGCTGW
WCAGCGYCYCGATGT
SELEX
Yin et al.(2017)
LEF1_FL_HT-SELEX_2
0.667
0.812
LEF1
M05895_2.00
Homo sapiens
WTCAAAGNNN
NNNCTTTGAW
SMiLE-seq
Isakova et al.(2017)
LEF1
0.667
0.812
LEF1
M09392_2.00
Homo sapiens
BSYTTTSWNNTBYH
DRVANNWSAAARSV
Misc
Kulakovskiy et al.(2013)
LEF1_HUMAN.H11MO.0.A
0.667
0.812
Lef1
M09402_2.00
Mus musculus
BSYTTTSWNNTBYH
DRVANNWSAAARSV
Misc
Kulakovskiy et al.(2013)
LEF1_MOUSE.H11MO.0.B
0.667
0.812
LEF1
M11311_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$LEF1_Q2_01
0.667
0.812
LEF1
M11312_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$LEF1_Q3
0.667
0.812
LEF1
M11313_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$LEF1_Q4
0.667
0.812
LEF1
M11314_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$LEF1_Q5_01
0.667
0.812
LEF1
M11315_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$LEF1_Q5
0.667
0.812
LEF1
M05773_2.00
Homo sapiens
ASATCAAAG
CTTTGATST
SELEX
Yin et al.(2017)
LEF1_eDBD_Methyl-HT-SELEX_1
0.667
0.812
LEF1
M05774_2.00
Homo sapiens
WCATCGRGGCGCTGW
WCAGCGCCYCGATGW
SELEX
Yin et al.(2017)
LEF1_eDBD_Methyl-HT-SELEX_2
0.667
0.812
LEF1
M05777_2.00
Homo sapiens
ASATCAAAG
CTTTGATST
SELEX
Yin et al.(2017)
LEF1_FL_Methyl-HT-SELEX_1
0.667
0.812
LEF1
M05778_2.00
Homo sapiens
ACATCGRGRCGCTGW
WCAGCGYCYCGATGT
SELEX
Yin et al.(2017)
LEF1_FL_Methyl-HT-SELEX_2
0.667
0.812
pan
M06451_2.00
Drosophila melanogaster
DWYCAAAD
HTTTGRWH
B1H
Zhu et al.(2011)
pan_FlyReg_FBgn0085432
0.667
0.783
pan
M08428_2.00
Drosophila melanogaster
WHNAAAVRNRSCGM
KCGSYNYBTTTNDW
ChIP-chip
Mathelier et al.(2014)
MA0237.2
0.667
0.783
pan
M11337_2.00
Drosophila melanogaster
AAGATCAAAGG
CCTTTGATCTT
Transfac
Matys et al.(2006)
I$TCF_1
0.667
0.783
pan
M11338_2.00
Drosophila melanogaster
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
I$TCF_Q6
0.667
0.783
Tcf7
M00193_2.00
Mus musculus
HNHNNNNNN
NNNNNNDND
PBM
Badis et al.(2009)
Tcf7_0950
0.642
0.812
Tcf7
M03532_2.00
Mus musculus
AAASATCAAAGV
BCTTTGATSTTT
SELEX
Jolma et al.(2013)
Tcf7_1
0.642
0.812
TCF7
M05755_2.00
Homo sapiens
DSATCAAWS
SWTTGATSH
SELEX
Yin et al.(2017)
TCF7_eDBD_HT-SELEX_1
0.642
0.812
TCF7
M05756_2.00
Homo sapiens
WCWKCGYCYCGWTGW
WCAWCGRGRCGMWGW
SELEX
Yin et al.(2017)
TCF7_eDBD_HT-SELEX_2
0.642
0.812
TCF7
M05890_2.00
Homo sapiens
NNASATCAAASNN
NNSTTTGATSTNN
SMiLE-seq
Isakova et al.(2017)
TCF7
0.642
0.812
TCF7
M09386_2.00
Homo sapiens
NBBCTTTSAWSTBNBN
NVNVASWTSAAAGVVN
Misc
Kulakovskiy et al.(2013)
TCF7_HUMAN.H11MO.0.A
0.642
0.812
Tcf7
M09400_2.00
Mus musculus
VVRVADSAAARVVVNV
BNBBBYTTTSHTBYBB
Misc
Kulakovskiy et al.(2013)
TCF7_MOUSE.H11MO.0.A
0.642
0.812
TCF7
M11294_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TCF1_Q5_01
0.642
0.812
TCF7
M11295_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TCF1_Q5
0.642
0.812
TCF7
M05757_2.00
Homo sapiens
RSATCAAAS
STTTGATSY
SELEX
Yin et al.(2017)
TCF7_eDBD_Methyl-HT-SELEX_1
0.642
0.812
TCF7
M05758_2.00
Homo sapiens
WCAWCGRGRCGMWGW
WCWKCGYCYCGWTGW
SELEX
Yin et al.(2017)
TCF7_eDBD_Methyl-HT-SELEX_2
0.642
0.812
pop-1
M00712_2.00
Caenorhabditis elegans
NNHDWVNNNN
NNNNBWHDNN
PBM
Narasimhan et al.(2015)
pTH9135
0.567
0.580
For this family, TFs with SR scores >
0.415
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
HNAJ_0001324301-mRNA-1
Sox
266
334
VKKPLNAFMLFMKEMRAKVVAECTMKESAAINQILGRKWHALPHEEQAKFYEMARKEKELHQRLYPGWS
Links
Other
Sox
family TFs
Other
Hymenolepis nana
TFs
502 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
BATDEDRAFT_27558
Batrachochytrium dendrobatidis
BATDEDRAFT_27558
I
0.000
CAD26261
Encephalitozoon cuniculi
CAD26261
D
0.000
CC1G_01962
Coprinopsis cinerea
CC1G_01962
I
0.000
CERSUDRAFT_94820
Ceriporiopsis subvermispora
CERSUDRAFT_94820
I
0.000
CNJ00280
Cryptococcus neoformans
CNJ00280
I
0.000
CY34DRAFT_106181
Suillus luteus
CY34DRAFT_106181
I
0.000
DI09_11p240
Microsporidia sp
DI09_11p240
N
0.000
E5Q_03771
Mixia osmundae
E5Q_03771
I
0.000
EDEG_01594
Edhazardia aedis
EDEG_01594
I
0.000
EHEL_031090
Encephalitozoon hellem
EHEL_031090
I
0.000
Eint_031070
Encephalitozoon intestinalis
Eint_031070
I
0.000
EROM_031050
Encephalitozoon romaleae
EROM_031050
I
0.000
estExt_fgenesh1_pg.C_10219
Sporobolomyces roseus
estExt_fgenesh1_pg.C_10219
I
0.000
estExt_fgenesh1_pg.C_20336
Sporobolomyces roseus
estExt_fgenesh1_pg.C_20336
I
0.000
e_gw1.10.235.1
Phycomyces blakesleeanus
e_gw1.10.235.1
I
0.000
fgenesh1_pg.C_scaffold_15000074
Phanerochaete chrysosporium
fgenesh1_pg.C_scaffold_15000074
I
0.000
fgenesh1_pg.C_scaffold_6000346
Sporobolomyces roseus
fgenesh1_pg.C_scaffold_6000346
N
0.000
fgeneshMC_pg.1_#_1279
Mucor circinelloides
fgeneshMC_pg.1_#_1279
N
0.000
fgeneshMC_pg.2_#_8
Mucor circinelloides
fgeneshMC_pg.2_#_8
I
0.000
fgeneshMC_pg.7_#_205
Mucor circinelloides
fgeneshMC_pg.7_#_205
N
0.000
fgeneshMC_pg.7_#_41
Mucor circinelloides
fgeneshMC_pg.7_#_41
I
0.000
fgeneshPB_pg.11__229
Phycomyces blakesleeanus
fgeneshPB_pg.11__229
N
0.000
GALMADRAFT_211191
Galerina marginata
GALMADRAFT_211191
I
0.000
GLOINDRAFT_235135
Rhizophagus irregularis
GLOINDRAFT_235135
N
0.000
GLOINDRAFT_43985
Rhizophagus irregularis
GLOINDRAFT_43985
I
0.000
GLOTRDRAFT_92391
Gloeophyllum trabeum
GLOTRDRAFT_92391
I
0.000
H311_05138
Anncaliia algerae
H311_05138
I
0.000
JAAARDRAFT_47621
Jaapia argillacea
JAAARDRAFT_47621
I
0.000
K443DRAFT_127593
Laccaria amethystina
K443DRAFT_127593
I
0.000
L804_00025
Cryptococcus gattii
L804_00025
I
0.000
LACBIDRAFT_293988
Laccaria bicolor
LACBIDRAFT_293988
I
0.000
M378DRAFT_8263
Amanita muscaria
M378DRAFT_8263
I
0.000
M407DRAFT_11655
Tulasnella calospora
M407DRAFT_11655
I
0.000
M407DRAFT_4599
Tulasnella calospora
M407DRAFT_4599
I
0.000
M408DRAFT_258951
Serendipita vermifera
M408DRAFT_258951
I
0.000
M413DRAFT_413744
Hebeloma cylindrosporum
M413DRAFT_413744
I
0.000
M896_030550
Ordospora colligata
M896_030550
I
0.000
MELLADRAFT_35504
Melampsora laricipopulina
MELLADRAFT_35504
I
0.000
Moror_6758
Moniliophthora roreri
Moror_6758
I
0.000
MVLG_02963
Microbotryum violaceum
MVLG_02963
I
0.000
MVLG_02993
Microbotryum violaceum
MVLG_02993
I
0.000
NAPIS_ORF00184
Nosema apis
NAPIS_ORF00184
I
0.000
NBO_11g0012
Nosema bombycis
NBO_11g0012
I
0.000
NBO_85g0005
Nosema bombycis
NBO_85g0005
I
0.000
NCER_100211
Nosema ceranae
NCER_100211
I
0.000
NEPG_01845
Nematocida parisii ertm1
NEPG_01845
I
0.000
NERG_00880
Nematocida sp
NERG_00880
I
0.000
PAN0_021c6005
Pseudozyma antarctica
PAN0_021c6005
N
0.000
PAXRUDRAFT_10369
Paxillus rubicundulus
PAXRUDRAFT_10369
I
0.000
PFL1_03213
Pseudozyma flocculosa
PFL1_03213
I
0.000
PHACADRAFT_182311
Phanerochaete carnosa
PHACADRAFT_182311
N
0.000
PHACADRAFT_257545
Phanerochaete carnosa
PHACADRAFT_257545
I
0.000
PHLGIDRAFT_55548
Phlebiopsis gigantea
PHLGIDRAFT_55548
I
0.000
PHSY_002545
Pseudozyma hubeiensis
PHSY_002545
N
0.000
PIIN_02203
Piriformospora indica
PIIN_02203
I
0.000
PLEOSDRAFT_173849
Pleurotus ostreatus
PLEOSDRAFT_173849
I
0.000
POSPLDRAFT_98870
Postia placenta
POSPLDRAFT_98870
I
0.000
PSEUBRA_SCAF22g00024
Pseudozyma brasiliensis
PSEUBRA_SCAF22g00024
N
0.000
PTTG_03012
Puccinia triticina
PTTG_03012
I
0.000
RHTO_03185
Rhodosporidium toruloides
RHTO_03185
I
0.000
RHTO_06229
Rhodosporidium toruloides
RHTO_06229
I
0.000
RO3G_11930
Rhizopus oryzae
RO3G_11930
I
0.000
RO3G_13360
Rhizopus oryzae
RO3G_13360
I
0.000
RO3G_16164
Rhizopus oryzae
RO3G_16164
N
0.000
RTG_01934
Rhodotorula glutinis
RTG_01934
I
0.000
SCHCODRAFT_257987
Schizophyllum commune
SCHCODRAFT_257987
I
0.000
SERLA73DRAFT_72643
Serpula lacrymans
SERLA73DRAFT_72643
I
0.000
SPPG_01974
Spizellomyces punctatus
SPPG_01974
N
0.000
SPPG_05249
Spizellomyces punctatus
SPPG_05249
I
0.000
SPPG_07013
Spizellomyces punctatus
SPPG_07013
N
0.000
sr13171
Sporisorium reilianum
sr13171
N
0.000
THOM_0497
Trachipleistophora hominis
THOM_0497
I
0.000
UHOR_03270
Ustilago hordei
UHOR_03270
N
0.000
UM06283
Ustilago maydis
UM06283
N
0.000
V565_070630
Rhizoctonia solani
V565_070630
I
0.000
VCUG_00708
Vavraia culicis
VCUG_00708
I
0.000
VSX2
Sus scrofa
ENSSSCG00000002363
I
0.000