ENSGMOG00000012645 (Gadus morhua)
T-box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00907 (T-box) IPR001699 ENSGMOG00000012645 T339964_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Tbx3
M00834_2.00 		Mus musculus
NHNDCACNHN
NDNGTGHNDN		 PBM
Weirauch et al.(2013)
pTH3998 		0.839 0.808
TBX3
M05801_2.00 		Homo sapiens
NDSGTGTBRN
NYVACACSHN		 SELEX
Yin et al.(2017)
TBX3_eDBD_HT-SELEX 		0.839 0.808
TBX3
M09426_2.00 		Homo sapiens
DVDGGTGBNAR
YTNVCACCHBH		 Misc
Kulakovskiy et al.(2013)
TBX3_HUMAN.H11MO.0.C 		0.839 0.808
Tbx3
M09429_2.00 		Mus musculus
RRGGTGBBR
YVVCACCYY		 Misc
Kulakovskiy et al.(2013)
TBX3_MOUSE.H11MO.0.B 		0.839 0.808
TBX3
M05802_2.00 		Homo sapiens
DAGGTGTKAN
NTMACACCTH		 SELEX
Yin et al.(2017)
TBX3_eDBD_Methyl-HT-SELEX 		0.839 0.808
Tbx2
M00830_2.00 		Mus musculus
NYVDCACBHN
NDVGTGHBRN		 PBM
Weirauch et al.(2013)
pTH3751 		0.837 0.808
TBX2
M03556_2.00 		Homo sapiens
GGTGTKADDWNTVACACB
VGTGTBANWHHTMACACC		 SELEX
Jolma et al.(2013)
TBX2_1 		0.837 0.808
TBX2
M03557_2.00 		Homo sapiens
NAGGTGTBAWN
NWTVACACCTN		 SELEX
Jolma et al.(2013)
TBX2_2 		0.837 0.808
TBX2
M05799_2.00 		Homo sapiens
NNVRCRCNNN
NNNGYGYBNN		 SELEX
Yin et al.(2017)
TBX2_eDBD_HT-SELEX 		0.837 0.808
Tbx2
M08044_2.00 		Mus musculus
GCHYBCTGGGADHTGTAGTYH
DRACTACADHTCCCAGVRDGC		 ChIP-seq
Chen et al.(2011)
SRP001585_Tbx2 		0.837 0.808
TBX2
M11381_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TBX2_Q2 		0.837 0.808
TBX2
M11382_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TBX2_Q5 		0.837 0.808
TBX2
M05800_2.00 		Homo sapiens
NNVRCRCBNN
NNVGYGYBNN		 SELEX
Yin et al.(2017)
TBX2_eDBD_Methyl-HT-SELEX 		0.837 0.808
TBX2
M02495_2.00 		Gasterosteus aculeatus
NNVDCACNHN
NDNGTGHBNN		 PBM
Weirauch et al.(2014)
pTH9182 		0.806 0.797
TBX2
M02496_2.00 		Takifugu rubripes
DAGGTGTBRN
NYVACACCTH		 PBM
Weirauch et al.(2014)
pTH9289 		0.806 0.791
XP_008203914.1
M01029_2.00 		Nasonia vitripennis
AGGTGTBA
TVACACCT		 PBM
SebePedros et al.(2013)
pTH9336 		0.794 0.758
estExt_fgenesh2_pg.C_1570024
M01030_2.00 		Branchiostoma floridae
NHNDCACNHN
NDNGTGHNDN		 PBM
SebePedros et al.(2013)
pTH9244 		0.761 0.643
Tbx5
M00833_2.00 		Mus musculus
AGGTGTBA
TVACACCT		 PBM
Weirauch et al.(2013)
pTH3775 		0.757 0.621
TBX5
M03552_2.00 		Homo sapiens
AGGTGTBA
TVACACCT		 SELEX
Jolma et al.(2013)
TBX5_1 		0.757 0.621
TBX5
M03553_2.00 		Homo sapiens
AGGTGTKANWWNTVACACCT
AGGTGTBANWWNTMACACCT		 SELEX
Jolma et al.(2013)
TBX5_2 		0.757 0.621
Tbx5
M09649_2.00 		Mus musculus
AGGTGHBA
TVDCACCT		 Misc
Heinz et al.(2010)
HL1-Tbx5.biotin_GSE21529 		0.757 0.621
TBX5
M11374_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TBX5_01 		0.757 0.621
TBX5
M11375_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TBX5_02 		0.757 0.621
Tbx5
M11387_2.00 		Mus musculus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TBX5_05 		0.757 0.621
TBX5
M11376_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TBX5_Q2 		0.757 0.621
TBX5
M11377_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TBX5_Q5 		0.757 0.621
Doc3
M03990_2.00 		Drosophila melanogaster
NRGGTGTBAD
HTVACACCYN		 SELEX
Nitta et al.(2015)
Doc3_1 		0.746 0.566
Doc3
M03991_2.00 		Drosophila melanogaster
DAGGTGTBAN
NTVACACCTH		 SELEX
Nitta et al.(2015)
Doc3_2 		0.746 0.566
Tbx4
M00831_2.00 		Mus musculus
AGGTGTBA
TVACACCT		 PBM
Weirauch et al.(2013)
pTH3973 		0.743 0.621
TBX4
M03558_2.00 		Homo sapiens
AGGTGTBA
TVACACCT		 SELEX
Jolma et al.(2013)
TBX4_1 		0.743 0.621
TBX4
M03559_2.00 		Homo sapiens
AGGTGTBANWWNTVACACBT
AVGTGTBANWWNTVACACCT		 SELEX
Jolma et al.(2013)
TBX4_2 		0.743 0.621
XP_001195863
M02498_2.00 		Strongylocentrotus purpuratus
AGGTGTBA
TVACACCT		 PBM
Weirauch et al.(2014)
pTH9340 		0.735 0.637
For this family, TFs with SR scores > 0.734 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSGMOP00000013534 T-box 94 273
ENSGMOP00000013538 T-box 97 281

Links

Other T-box family TFs
Other Gadus morhua TFs

302 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29683.m000467 Ricinus communis 29683.m000467 N
ANAC104 Vitis vinifera VIT_12s0055g00510 N
ANAC104 Arabidopsis lyrata fgenesh2_kg.8__2481__AT5G64530.1 N
Aquca_022_00269 Aquilegia coerulea Aquca_022_00269 N
Bo2g166280 Brassica oleracea Bo2g166280 N
Bo3g101220 Brassica oleracea Bo3g101220 N
Bo9g018140 Brassica oleracea Bo9g018140 N
Bostr.0568s0345 Boechera stricta Bostr.0568s0345 N
Bra024306 Brassica rapa Bra024306 N
Bra031915 Brassica rapa Bra031915 N
Bra037779 Brassica rapa Bra037779 N
Cagra.0248s0135 Capsella grandiflora Cagra.0248s0135 N
Carubv10027198m.g Capsella rubella Carubv10027198m.g N
cassava1502.valid.m1 Manihot esculenta cassava1502.valid.m1 N
Ca_05227 Cicer arietinum Ca_05227 N
chr4.CM0337.760.nc Lotus japonicus chr4.CM0337.760.nc N
chr6.CM0314.510.nd Lotus japonicus chr6.CM0314.510.nd N
Ciclev10002538m.g Citrus clementina Ciclev10002538m.g N
Cla009592 Citrullus lanatus Cla009592 N
Cucsa.345830 Cucumis sativus Cucsa.345830 N
Eucgr.I02695 Eucalyptus grandis Eucgr.I02695 N
evm.TU.supercontig_63.29 Carica papaya evm.TU.supercontig_63.29 N
GLYMA05G24910 Glycine max GLYMA05G24910 N
GLYMA06G15990 Glycine max GLYMA06G15990 N
GLYMA08G08010 Glycine max GLYMA08G08010 N
GLYMA08G19300 Glycine max GLYMA08G19300 N
GLYMA15G05690 Glycine max GLYMA15G05690 N
Gorai.005G217400 Gossypium raimondii Gorai.005G217400 N
Gorai.008G014700 Gossypium raimondii Gorai.008G014700 N
Gorai.013G063500 Gossypium raimondii Gorai.013G063500 N
Lus10000206.g Linum usitatissimum Lus10000206.g N
Lus10010747.g Linum usitatissimum Lus10010747.g N
Lus10035647.g Linum usitatissimum Lus10035647.g N
Lus10035648.g Linum usitatissimum Lus10035648.g N
MDP0000240094 Malus domestica MDP0000240094 N
MDP0000250487 Malus domestica MDP0000250487 N
MTR_4g094302 Medicago truncatula MTR_4g094302 N
NAC104 Arabidopsis thaliana AT5G64530 N
orange1.1g029016m.g Citrus sinensis orange1.1g029016m.g N
PGSC0003DMG400029741 Solanum tuberosum PGSC0003DMG400029741 N
PK12901.1 Cannabis sativa PK12901.1 N
Pm004078 Prunus mume Pm004078 N
POPTR_0001s21440 Populus trichocarpa POPTR_0001s21440 N
POPTR_0003s01720 Populus trichocarpa POPTR_0003s01720 N
POPTR_0007s04250 Populus trichocarpa POPTR_0007s04250 N
PRUPE_ppa019508mg Prunus persica PRUPE_ppa019508mg N
SapurV1A.0344s0360 Salix purpurea SapurV1A.0344s0360 I
Solyc01g104900.2 Solanum lycopersicum Solyc01g104900.2 N
TCM_007543 Theobroma cacao TCM_007543 I
Thhalv10004805m.g Eutrema salsugineum Thhalv10004805m.g N
VIT_04s0044g01500 Vitis vinifera VIT_04s0044g01500 N