CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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tbx19
(
Takifugu rubripes
)
T-box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00907 (T-box)
IPR001699
ENSTRUG00000005718
T340548_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
T
M05809_2.00
Homo sapiens
NANGTGYGAHWWNTVRCACCTN
NAGGTGYBANWWDTCRCACNTN
SELEX
Yin et al.(2017)
T_eDBD_HT-SELEX_1
0.815
0.750
T
M05810_2.00
Homo sapiens
DTCRCAYVTABGTGYGAH
DTCRCACVTABRTGYGAH
SELEX
Yin et al.(2017)
T_eDBD_HT-SELEX_2
0.815
0.750
T
M09427_2.00
Homo sapiens
BYNVCANNNVDGTGWKARDN
NHYTMWCACHBNNNTGBNRV
Misc
Kulakovskiy et al.(2013)
BRAC_HUMAN.H11MO.0.A
0.815
0.750
T
M09431_2.00
Mus musculus
VVNRAWTTSACASNYHDVTGBNMAN
NTKNVCABHDRNSTGTSAAWTYNBB
Misc
Kulakovskiy et al.(2013)
BRAC_MOUSE.H11MO.0.B
0.815
0.750
T
M09651_2.00
Mus musculus
NYTVDCASNNNNSTGHBARNN
NNYTVDCASNNNNSTGHBARN
Misc
Heinz et al.(2010)
Mesoendoderm-Brachyury_GSE54963
0.815
0.750
T
M11384_2.00
Homo sapiens
MKHBTSACACSTAGGTGTGAAATK
MATTTCACACCTASGTGTSAVDMK
Transfac
Matys et al.(2006)
V$BRACH_01
0.815
0.750
T
M05811_2.00
Homo sapiens
NABGTGYGAHWWNTVRCACSTN
NASGTGYBANWWDTCRCACVTN
SELEX
Yin et al.(2017)
T_eDBD_Methyl-HT-SELEX_1
0.815
0.750
T
M05812_2.00
Homo sapiens
DTMRCAYVTABGTGYKAH
DTMRCACVTABRTGYKAH
SELEX
Yin et al.(2017)
T_eDBD_Methyl-HT-SELEX_2
0.815
0.750
TBX19
M03562_2.00
Homo sapiens
NDTVRCACVTANGTGYKANN
NNTMRCACNTABGTGYBAHN
SELEX
Jolma et al.(2013)
TBX19_1
0.812
0.790
TBX19
M05803_2.00
Homo sapiens
NAGGTGYBAHWDTMRCACNTN
NANGTGYKAHWDTVRCACCTN
SELEX
Yin et al.(2017)
TBX19_eDBD_HT-SELEX
0.812
0.790
TBX19
M05804_2.00
Homo sapiens
NANGTGYKAHWDTVRCACSTN
NASGTGYBAHWDTMRCACNTN
SELEX
Yin et al.(2017)
TBX19_eDBD_Methyl-HT-SELEX
0.812
0.790
byn
M03984_2.00
Drosophila melanogaster
ABGTGYGADDD
HHHTCRCACVT
SELEX
Nitta et al.(2015)
byn_1
0.790
0.705
byn
M03985_2.00
Drosophila melanogaster
DNGTGYBAHWWDTVRCACNH
DNGTGYBAHWWDTVRCACNH
SELEX
Nitta et al.(2015)
byn_2
0.790
0.705
byn
M03986_2.00
Drosophila melanogaster
RDGTGYGADNDNDNNNNNNDRDGTGYGADD
HHTCRCACHYHNNNNNNHNHNHTCRCACHY
SELEX
Nitta et al.(2015)
byn_3
0.790
0.705
byn
M03987_2.00
Drosophila melanogaster
NNTMRCAYNWWNRTGYKAHN
NDTMRCAYNWWNRTGYKANN
SELEX
Nitta et al.(2015)
byn_4
0.790
0.705
byn
M06453_2.00
Drosophila melanogaster
ADGTGCDA
THGCACHT
B1H
Zhu et al.(2011)
byn_FlyReg_FBgn0011723
0.790
0.705
For this family, TFs with SR scores >
0.734
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSTRUP00000013883
T-box
44
223
VMLEDVELWRKFQHITNEMIVTKNGRRMFPVLKISVSGLDPSSMYSFLLDFVPADSCRWKFANGEWVTAGRAESLREGRGHSSIYIHPDSPNFGAHWMKAAVTFNKVKLTNKVNGGGQIMLNSLHKYEPQLHIVCVGSRHRLVSNVSFKETQFIAVTAYQNEEITALKIKYNPFAKAFLD
ENSTRUP00000013884
T-box
44
223
VMLEDVELWRKFQHITNEMIVTKNGRRMFPVLKISVSGLDPSSMYSFLLDFVPADSCRWKFANGEWVTAGRAESLREGRGHSSIYIHPDSPNFGAHWMKAAVTFNKVKLTNKVNGGGQIMLNSLHKYEPQLHIVCVGSRHRLVSNVSFKETQFIAVTAYQNEEITALKIKYNPFAKAFLD
Links
Other
T-box
family TFs
Other
Takifugu rubripes
TFs
178 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Aan_R011488
Calypte anna
Aan_R011488
I
ACOC_0000703501
Angiostrongylus costaricensis
ACOC_0000703501
I
Afo_R004723
Aptenodytes forsteri
Afo_R004723
I
Alligator_sinensis_CCG009660.1
Alligator sinensis
Alligator_sinensis_CCG009660.1
I
Alligator_sinensis_CCG014115.1
Alligator sinensis
Alligator_sinensis_CCG014115.1
I
ANCCAN_23624
Ancylostoma caninum
ANCCAN_23624
I
ANCCAN_24706
Ancylostoma caninum
ANCCAN_24706
I
ANCCEY_02877
Ancylostoma ceylanicum
ANCCEY_02877
I
ANCDUO_15205
Ancylostoma duodenale
ANCDUO_15205
I
Brh_R001903
Buceros rhinoceros
Brh_R001903
I
Brh_R009461
Buceros rhinoceros
Brh_R009461
I
CGOC_0000822101
Cylicostephanus goldi
CGOC_0000822101
I
Cmyd_10008872
Chelonia mydas
Cmyd_10008872
I
Cmyd_10014540
Chelonia mydas
Cmyd_10014540
I
D917_07791
Trichinella nativa
D917_07791
I
D918_02805
Trichuris suis
D918_02805
I
DICVIV_00921
Dictyocaulus viviparus
DICVIV_00921
I
ENSAMEG00000015776
Ailuropoda melanoleuca
ENSAMEG00000015776
I
ENSAMEG00000018305
Ailuropoda melanoleuca
ENSAMEG00000018305
I
ENSAMXG00000011717
Astyanax mexicanus
ENSAMXG00000011717
I
ENSAMXG00000012231
Astyanax mexicanus
ENSAMXG00000012231
I
ENSAMXG00000014376
Astyanax mexicanus
ENSAMXG00000014376
I
ENSAPLG00000002994
Anas platyrhynchos
ENSAPLG00000002994
N
ENSAPLG00000010950
Anas platyrhynchos
ENSAPLG00000010950
I
ENSBTAP00000014573-D1
Bos grunniens
ENSBTAP00000014573-D1
I
ENSCSAG00000012283
Chlorocebus sabaeus
ENSCSAG00000012283
I
ENSCSAG00000015530
Chlorocebus sabaeus
ENSCSAG00000015530
I
ENSCSAVG00000009510
Ciona savignyi
ENSCSAVG00000009510
N
ENSECAG00000023529
Equus caballus
ENSECAG00000023529
I
ENSFALG00000006312
Ficedula albicollis
ENSFALG00000006312
I
ENSFALG00000012357
Ficedula albicollis
ENSFALG00000012357
I
ENSGACG00000014345
Gasterosteus aculeatus
ENSGACG00000014345
I
ENSGALG00000023113
Gallus gallus
ENSGALG00000023113
N
ENSGMOG00000001679
Gadus morhua
ENSGMOG00000001679
I
ENSGMOG00000009022
Gadus morhua
ENSGMOG00000009022
I
ENSGMOG00000015166
Gadus morhua
ENSGMOG00000015166
I
ENSLACG00000013691
Latimeria chalumnae
ENSLACG00000013691
I
ENSLACG00000018909
Latimeria chalumnae
ENSLACG00000018909
I
ENSLOCG00000010701
Lepisosteus oculatus
ENSLOCG00000010701
I
ENSLOCG00000016698
Lepisosteus oculatus
ENSLOCG00000016698
I
ENSMEUG00000002316
Macropus eugenii
ENSMEUG00000002316
I
ENSMEUG00000013465
Macropus eugenii
ENSMEUG00000013465
I
ENSMICG00000006078
Microcebus murinus
ENSMICG00000006078
I
ENSMODG00000006137
Monodelphis domestica
ENSMODG00000006137
I
ENSMPUG00000009289
Mustela putorius furo
ENSMPUG00000009289
I
ENSMPUG00000013456
Mustela putorius furo
ENSMPUG00000013456
I
ENSNLEG00000014435
Nomascus leucogenys
ENSNLEG00000014435
I
ENSNLEG00000016325
Nomascus leucogenys
ENSNLEG00000016325
I
ENSOARG00000001473
Ovis aries
ENSOARG00000001473
I
ENSOARG00000009324
Ovis aries
ENSOARG00000009324
I
ENSONIG00000012467
Oreochromis niloticus
ENSONIG00000012467
I
ENSONIG00000013518
Oreochromis niloticus
ENSONIG00000013518
I
ENSONIG00000020193
Oreochromis niloticus
ENSONIG00000020193
I
ENSORLG00000001996
Oryzias latipes
ENSORLG00000001996
I
ENSP00000355925
Macaca fascicularis
ENSP00000355925
I
ENSP00000405932-D1
Bos grunniens
ENSP00000405932-D1
I
ENSPANG00000017714
Papio anubis
ENSPANG00000017714
I
ENSPANG00000024084
Papio anubis
ENSPANG00000024084
I
ENSPFOG00000003774
Poecilia formosa
ENSPFOG00000003774
I
ENSPFOG00000007812
Poecilia formosa
ENSPFOG00000007812
N
ENSPFOG00000014635
Poecilia formosa
ENSPFOG00000014635
I
ENSPFOG00000015503
Poecilia formosa
ENSPFOG00000015503
I
ENSPMAG00000006606
Petromyzon marinus
ENSPMAG00000006606
I
ENSPPYG00000000224
Pongo abelii
ENSPPYG00000000224
I
ENSPPYG00000005992
Pongo abelii
ENSPPYG00000005992
I
ENSPSIG00000008098
Pelodiscus sinensis
ENSPSIG00000008098
I
ENSSHAG00000018304
Sarcophilus harrisii
ENSSHAG00000018304
I
ENSSTOG00000023253
Ictidomys tridecemlineatus
ENSSTOG00000023253
I
ENSTGUG00000012170
Taeniopygia guttata
ENSTGUG00000012170
I
ENSTRUG00000010061
Takifugu rubripes
ENSTRUG00000010061
I
ENSTRUG00000012738
Takifugu rubripes
ENSTRUG00000012738
I
ENSXMAG00000003709
Xiphophorus maculatus
ENSXMAG00000003709
I
ENSXMAG00000004000
Xiphophorus maculatus
ENSXMAG00000004000
I
ENSXMAG00000014663
Xiphophorus maculatus
ENSXMAG00000014663
I
e_gw.483.46.1
Branchiostoma floridae
e_gw.483.46.1
I
Gfo_R010932
Geospiza fortis
Gfo_R010932
I
HCOI02128500
Haemonchus contortus
HCOI02128500
I
Myotis_brandtii_Prox1_10018243
Myotis brandtii
Myotis_brandtii_Prox1_10018243
I
Myotis_brandtii_PROX2_10012935
Myotis brandtii
Myotis_brandtii_PROX2_10012935
I
NECAME_07738
Necator americanus
NECAME_07738
I
nOo.2.0.1.g10265
Onchocerca ochengi
nOo.2.0.1.g10265
I
Ogr08018
Ophisaurus gracilis
Ogr08018
N
Ogr11789
Ophisaurus gracilis
Ogr11789
I
PROX1
Anolis carolinensis
ENSACAG00000006174
I
PROX1
Bos taurus
ENSBTAG00000010978
I
PROX1
Canis familiaris
ENSCAFG00000012445
I
PROX1
Callithrix jacchus
ENSCJAG00000015514
I
PROX1
Cavia porcellus
ENSCPOG00000011987
I
PROX1
Dasypus novemcinctus
ENSDNOG00000001297
I
PROX1
Equus caballus
ENSECAG00000019220
I
PROX1
Felis catus
ENSFCAG00000029702
I
PROX1
Homo sapiens
ENSG00000117707
D
PROX1
Gallus gallus
ENSGALG00000009791
I
PROX1
Gorilla gorilla
ENSGGOG00000015130
I
PROX1
Loxodonta africana
ENSLAFG00000006344
I
PROX1
Meleagris gallopavo
ENSMGAG00000009635
I
PROX1
Microcebus murinus
ENSMICG00000011593
I
PROX1
Myotis lucifugus
ENSMLUG00000006993
I
PROX1
Macaca mulatta
ENSMMUG00000011914
I
Prox1
Mus musculus
ENSMUSG00000010175
I
PROX1
Oryctolagus cuniculus
ENSOCUG00000008274
I
PROX1
Otolemur garnettii
ENSOGAG00000017025
I
PROX1
Ochotona princeps
ENSOPRG00000005115
I
PROX1
Pan troglodytes
ENSPTRG00000001974
I
PROX1
Pteropus vampyrus
ENSPVAG00000009067
I
Prox1
Rattus norvegicus
ENSRNOG00000003694
I
PROX1
Sus scrofa
ENSSSCG00000015584
I
PROX1
Taeniopygia guttata
ENSTGUG00000002974
I
prox1
Xenopus tropicalis
XB-GENE-485327
I
prox1.L
Xenopus laevis
XB-GENE-485331
I
prox1a
Danio rerio
ENSDARG00000055158
I
prox1a
Gasterosteus aculeatus
ENSGACG00000010140
I
prox1a
Oryzias latipes
ENSORLG00000014947
I
prox1a
Tetraodon nigroviridis
ENSTNIG00000016378
I
prox1a
Takifugu rubripes
ENSTRUG00000013890
I
PROX2
Anolis carolinensis
ENSACAG00000016714
N
PROX2
Bos taurus
ENSBTAG00000015052
I
PROX2
Canis familiaris
ENSCAFG00000016985
I
PROX2
Choloepus hoffmanni
ENSCHOG00000000477
I
PROX2
Callithrix jacchus
ENSCJAG00000020548
I
PROX2
Cavia porcellus
ENSCPOG00000009322
I
prox2
Danio rerio
ENSDARG00000041952
I
PROX2
Dasypus novemcinctus
ENSDNOG00000005528
I
PROX2
Felis catus
ENSFCAG00000028658
I
PROX2
Homo sapiens
ENSG00000119608
I
prox2
Gasterosteus aculeatus
ENSGACG00000007538
I
PROX2
Gorilla gorilla
ENSGGOG00000022893
I
PROX2
Loxodonta africana
ENSLAFG00000012545
I
PROX2
Meleagris gallopavo
ENSMGAG00000012715
N
PROX2
Myotis lucifugus
ENSMLUG00000005898
I
PROX2
Macaca mulatta
ENSMMUG00000004259
N
Prox2
Mus musculus
ENSMUSG00000042320
I
PROX2
Ornithorhynchus anatinus
ENSOANG00000009815
I
PROX2
Oryctolagus cuniculus
ENSOCUG00000021246
I
PROX2
Otolemur garnettii
ENSOGAG00000001327
I
PROX2
Ochotona princeps
ENSOPRG00000011820
I
prox2
Oryzias latipes
ENSORLG00000016587
I
PROX2
Procavia capensis
ENSPCAG00000006424
I
PROX2
Pan troglodytes
ENSPTRG00000006542
I
PROX2
Pteropus vampyrus
ENSPVAG00000000659
I
Prox2
Rattus norvegicus
ENSRNOG00000005054
I
PROX2
Sus scrofa
ENSSSCG00000002373
I
PROX2
Tupaia belangeri
ENSTBEG00000014423
I
prox2
Tetraodon nigroviridis
ENSTNIG00000017414
I
prox2
Takifugu rubripes
ENSTRUG00000018353
I
PROX2
Tursiops truncatus
ENSTTRG00000001912
I
PROX2
Vicugna pacos
ENSVPAG00000003072
I
Pvit_00353
Pogona vitticeps
Pvit_00353
I
Pvit_01205
Pogona vitticeps
Pvit_01205
I
SBAD_0000068201
Soboliphyme baturini
SBAD_0000068201
I
SVUK_0000405601
Strongylus vulgaris
SVUK_0000405601
I
Tal_R002989
Tyto alba
Tal_R002989
I
TELCIR_21732
Teladorsagia circumcincta
TELCIR_21732
I
TELCIR_22329
Teladorsagia circumcincta
TELCIR_22329
I