AMTR_s00017p00035550 (Amborella trichopoda)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03634 (TCP) IPR005333 AMTR_s00017p00035550 T343664_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TCP8
M01311_2.00 		Arabidopsis thaliana
NGGNMCCAC
GTGGKNCCN		 PBM
Lambert et al.(2019)
pTH11569 		0.968 0.556
PK12736.1
M01315_2.00 		Cannabis sativa
NRRSCMYAYNNNNN
NNNNNRTRKGSYYN		 PBM
Lambert et al.(2019)
pTH10121 		0.967 0.556
TCP14
M07289_2.00 		Arabidopsis thaliana
AVADAKVDBGTGGGDCCCAC
GTGGGHCCCACVHBMTHTBT		 Dap-seq
OMalley et al.(2016)
TCP14_col_b 		0.967 0.526
TCP15
M00892_2.00 		Arabidopsis thaliana
NNGGNCCCAC
GTGGGNCCNN		 PBM
Franco-Zorrilla et al.(2014)
TCP15 		0.967 0.533
TCP15
M07277_2.00 		Arabidopsis thaliana
RTRGGDCCCACHH
DDGTGGGHCCYAY		 Dap-seq
OMalley et al.(2016)
At1g69690_col_a 		0.967 0.533
TCP15
M07278_2.00 		Arabidopsis thaliana
RTRGGNCCCACHW
WDGTGGGNCCYAY		 Dap-seq
OMalley et al.(2016)
At1g69690_colamp_a 		0.967 0.533
TCP15
M11394_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$TCP15_01 		0.967 0.533
TCP23
M00891_2.00 		Arabidopsis thaliana
NNGGKCCCAC
GTGGGMCCNN		 PBM
Franco-Zorrilla et al.(2014)
TCP23 		0.966 0.570
TCP22
M07279_2.00 		Arabidopsis thaliana
RTRGGNCCCACHN
NDGTGGGNCCYAY		 Dap-seq
OMalley et al.(2016)
At1g72010_colamp_a 		0.964 0.556
TCP22
M07280_2.00 		Arabidopsis thaliana
RTGGGDCCCACNN
NNGTGGGHCCCAY		 Dap-seq
OMalley et al.(2016)
At1g72010_col 		0.964 0.556
TCP21
M07292_2.00 		Arabidopsis thaliana
NNRTGGGDCCCACN
NGTGGGHCCCAYNN		 Dap-seq
OMalley et al.(2016)
At5g08330_col_a 		0.958 0.519
TCP21
M07293_2.00 		Arabidopsis thaliana
RTRGGDCCCACH
DGTGGGHCCYAY		 Dap-seq
OMalley et al.(2016)
At5g08330_colamp_a 		0.958 0.519
TCP7
M07294_2.00 		Arabidopsis thaliana
RTGGGNCCCAC
GTGGGNCCCAY		 Dap-seq
OMalley et al.(2016)
TCP7_col_a 		0.955 0.489
GLYMA19G26560
M02511_2.00 		Glycine max
BGGBCCCAC
GTGGGVCCV		 PBM
Weirauch et al.(2014)
pTH9184 		0.954 0.481
PK13314.1
M01316_2.00 		Cannabis sativa
NNGGNCCCAC
GTGGGNCCNN		 PBM
Lambert et al.(2019)
pTH11330 		0.953 0.452
PCF2
M11399_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PCF2_01 		0.953 0.437
TCP19
M02504_2.00 		Arabidopsis thaliana
NNGGVCCCAC
GTGGGBCCNN		 PBM
Weirauch et al.(2014)
pTH7452 		0.952 0.444
VIT_15s0048g01150
M02515_2.00 		Vitis vinifera
NNGGNCCCAC
GTGGGNCCNN		 PBM
Weirauch et al.(2014)
pTH9294 		0.952 0.452
cassava45561.m1
M02516_2.00 		Manihot esculenta
KGGVCCCACH
DGTGGGBCCM		 PBM
Weirauch et al.(2014)
pTH9207 		0.951 0.459
TCP20
M02502_2.00 		Arabidopsis thaliana
GGSCCCACNN
NNGTGGGSCC		 PBM
Weirauch et al.(2014)
pTH8159 		0.950 0.430
TCP20
M07285_2.00 		Arabidopsis thaliana
NNNNNNNNNNGTGGGRCCCAC
GTGGGYCCCACNNNNNNNNNN		 Dap-seq
OMalley et al.(2016)
TCP20_col_a 		0.950 0.430
TCP20
M07286_2.00 		Arabidopsis thaliana
RTGGGDCCCACH
DGTGGGHCCCAY		 Dap-seq
OMalley et al.(2016)
TCP20_colamp_a 		0.950 0.430
TCP20
M11397_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$TCP20_01 		0.950 0.430
AT-TCP20
M02507_2.00 		Arabidopsis lyrata
GRSCCCAC
GTGGGSYC		 PBM
Weirauch et al.(2014)
pTH9229 		0.950 0.452
TCP9
M01086_2.00 		Arabidopsis thaliana
NNGGGCCCACN
NGTGGGCCCNN		 PBM
Sullivan et al.(2014)
pTH9796 		0.949 0.452
TCP9
M07281_2.00 		Arabidopsis thaliana
RTGGGDCCCAC
GTGGGHCCCAY		 Dap-seq
OMalley et al.(2016)
At2g45680_colamp_a 		0.949 0.452
TCP9
M07282_2.00 		Arabidopsis thaliana
DGTGGGRCCCACDDNDNDNBN
NVNHNHNHHGTGGGYCCCACH		 Dap-seq
OMalley et al.(2016)
At2g45680_col_b 		0.949 0.452
fgenesh2_kg.8__1074__AT5G51910.2
M02509_2.00 		Arabidopsis lyrata
GRSCCCAC
GTGGGSYC		 PBM
Weirauch et al.(2014)
pTH9232 		0.948 0.452
LjSGA_053525.1
M02518_2.00 		Lotus japonicus
GGNCCCAC
GTGGGNCC		 PBM
Weirauch et al.(2014)
pTH9201 		0.947 0.444
PK14653.1
M01317_2.00 		Cannabis sativa
BGGSCCCAC
GTGGGSCCV		 PBM
Lambert et al.(2019)
pTH11324 		0.942 0.430
PK14653.1
M02517_2.00 		Cannabis sativa
BTGGGCCCAV
BTGGGCCCAV		 PBM
Weirauch et al.(2014)
pTH9586 		0.942 0.430
OsI_08196
M02513_2.00 		Oryza sativa
GGGCCCAC
GTGGGCCC		 PBM
Weirauch et al.(2014)
pTH9274 		0.938 0.422
OS02G0635800
M02512_2.00 		Oryza sativa
NBGGGCCCVN
NBGGGCCCVN		 PBM
Weirauch et al.(2014)
pTH8856 		0.938 0.415
TCP11
M11395_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$TCP11_01 		0.882 0.370
TCP11
M11396_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$TCP11_02 		0.882 0.370
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ERN08535 TCP 114 248

Links

Other TCP family TFs
Other Amborella trichopoda TFs

659 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29751.m001898 Ricinus communis 29751.m001898 I
30180.m001019 Ricinus communis 30180.m001019 I
AMTR_s00012p00251530 Amborella trichopoda AMTR_s00012p00251530 I
AMTR_s00019p00208460 Amborella trichopoda AMTR_s00019p00208460 I
AMTR_s00101p00128190 Amborella trichopoda AMTR_s00101p00128190 I
Aquca_003_00124 Aquilegia coerulea Aquca_003_00124 I
Aquca_009_00074 Aquilegia coerulea Aquca_009_00074 I
Aquca_009_00923 Aquilegia coerulea Aquca_009_00923 I
AT3G10760 Arabidopsis thaliana AT3G10760 I
AT5G05090 Arabidopsis thaliana AT5G05090 D
BGIOSGA018058 Oryza indica BGIOSGA018058 I
Bo1g070860 Brassica oleracea Bo1g070860 I
Bo3g003150 Brassica oleracea Bo3g003150 I
Bo3g132770 Brassica oleracea Bo3g132770 I
Bo4g012890 Brassica oleracea Bo4g012890 I
Bo5g019990 Brassica oleracea Bo5g019990 I
Bo5g137150 Brassica oleracea Bo5g137150 I
Bo9g177390 Brassica oleracea Bo9g177390 I
BOA Arabidopsis thaliana AT5G59570 I
Bostr.13129s0456 Boechera stricta Bostr.13129s0456 I
Bostr.18473s0293 Boechera stricta Bostr.18473s0293 I
Bostr.19424s0999 Boechera stricta Bostr.19424s0999 I
Bostr.26833s0280 Boechera stricta Bostr.26833s0280 I
Bostr.27991s0013 Boechera stricta Bostr.27991s0013 I
Bostr.9345s0035 Boechera stricta Bostr.9345s0035 I
Bra004593 Brassica rapa Bra004593 I
Bra005837 Brassica rapa Bra005837 I
Bra009087 Brassica rapa Bra009087 I
Bra018204 Brassica rapa Bra018204 I
Bra026635 Brassica rapa Bra026635 I
Bra029866 Brassica rapa Bra029866 I
Bra033809 Brassica rapa Bra033809 I
Bra034144 Brassica rapa Bra034144 I
BRADI1G47400 Brachypodium distachyon BRADI1G47400 I
BRADI1G69480 Brachypodium distachyon BRADI1G69480 I
BRADI2G25380 Brachypodium distachyon BRADI2G25380 I
BRADI2G62067 Brachypodium distachyon BRADI2G62067 I
BRADI3G54120 Brachypodium distachyon BRADI3G54120 I
Cagra.0448s0013 Capsella grandiflora Cagra.0448s0013 I
Cagra.0834s0003 Capsella grandiflora Cagra.0834s0003 I
Cagra.0995s0002 Capsella grandiflora Cagra.0995s0002 I
Cagra.1317s0057 Capsella grandiflora Cagra.1317s0057 I
Cagra.1504s0014 Capsella grandiflora Cagra.1504s0014 I
Cagra.1642s0062 Capsella grandiflora Cagra.1642s0062 I
Carubv10003130m.g Capsella rubella Carubv10003130m.g I
Carubv10014134m.g Capsella rubella Carubv10014134m.g I
Carubv10017603m.g Capsella rubella Carubv10017603m.g I
Carubv10024859m.g Capsella rubella Carubv10024859m.g I
Carubv10024931m.g Capsella rubella Carubv10024931m.g I
Carubv10026895m.g Capsella rubella Carubv10026895m.g I
cassava19434.valid.m1 Manihot esculenta cassava19434.valid.m1 I
cassava20582.m1 Manihot esculenta cassava20582.m1 I
cassava34353.m1 Manihot esculenta cassava34353.m1 I
Ca_07144 Cicer arietinum Ca_07144 I
Ca_16282 Cicer arietinum Ca_16282 I
CHLREDRAFT_111844 Chlamydomonas reinhardtii CHLREDRAFT_111844 I
chr1.CM0269.130.nd Lotus japonicus chr1.CM0269.130.nd I
Ciclev10004989m.g Citrus clementina Ciclev10004989m.g I
Ciclev10012203m.g Citrus clementina Ciclev10012203m.g I
Ciclev10028658m.g Citrus clementina Ciclev10028658m.g I
Cla008353 Citrullus lanatus Cla008353 I
Cla012286 Citrullus lanatus Cla012286 I
Cla017714 Citrullus lanatus Cla017714 I
Cucsa.117700 Cucumis sativus Cucsa.117700 I
Cucsa.140020 Cucumis sativus Cucsa.140020 I
Cucsa.358530 Cucumis sativus Cucsa.358530 I
estExt_fgenesh2_pg.C_Chr_120081 Micromonas sp RCC299 estExt_fgenesh2_pg.C_Chr_120081 I
est_orfs.10_1861_4270447:1 Micromonas pusilla est_orfs.10_1861_4270447:1 I
Eucgr.A02201 Eucalyptus grandis Eucgr.A02201 I
Eucgr.B02313 Eucalyptus grandis Eucgr.B02313 I
Eucgr.K01670 Eucalyptus grandis Eucgr.K01670 I
EuGene.0000090108 Micromonas pusilla EuGene.0000090108 I
EuGene.0600010100 Micromonas sp RCC299 EuGene.0600010100 I
evm.TU.supercontig_81.106 Carica papaya evm.TU.supercontig_81.106 I
evm.TU.supercontig_92.70 Carica papaya evm.TU.supercontig_92.70 I
F775_08927 Aegilops tauschii F775_08927 I
F775_32153 Aegilops tauschii F775_32153 I
fgenesh2_kg.8__1908__AT5G59570.1 Arabidopsis lyrata fgenesh2_kg.8__1908__AT5G59570.1 I
fgeneshCV_pg.C_scaffold_15000185 Chlorella vulgaris fgeneshCV_pg.C_scaffold_15000185 I
gene17673-v1.0-hybrid Fragaria vesca gene17673-v1.0-hybrid I
gene30204-v1.0-hybrid Fragaria vesca gene30204-v1.0-hybrid I
GLYMA02G21820 Glycine max GLYMA02G21820 I
GLYMA03G27890 Glycine max GLYMA03G27890 I
GLYMA11G14490 Glycine max GLYMA11G14490 I
GLYMA12G06406 Glycine max GLYMA12G06406 I
GLYMA19G30700 Glycine max GLYMA19G30700 I
Gorai.001G112200 Gossypium raimondii Gorai.001G112200 I
Gorai.002G230800 Gossypium raimondii Gorai.002G230800 I
Gorai.003G129100 Gossypium raimondii Gorai.003G129100 I
Gorai.007G351500 Gossypium raimondii Gorai.007G351500 I
Gorai.009G097100 Gossypium raimondii Gorai.009G097100 I
GRMZM2G067702 Zea mays GRMZM2G067702 I
GRMZM2G099797 Zea mays GRMZM2G099797 I
GRMZM2G126834 Zea mays GRMZM2G126834 I
GRMZM2G398055 Zea mays GRMZM2G398055 I
GRMZM2G471600 Zea mays GRMZM2G471600 I
GSMUA_Achr10G02420_001 Musa acuminata GSMUA_Achr10G02420_001 I
GSMUA_Achr10G12590_001 Musa acuminata GSMUA_Achr10G12590_001 I
GSMUA_Achr11G14170_001 Musa acuminata GSMUA_Achr11G14170_001 I
GSMUA_Achr2G01920_001 Musa acuminata GSMUA_Achr2G01920_001 I
GSMUA_Achr5G07060_001 Musa acuminata GSMUA_Achr5G07060_001 I
GSMUA_Achr5G27500_001 Musa acuminata GSMUA_Achr5G27500_001 I
GSMUA_Achr8G05880_001 Musa acuminata GSMUA_Achr8G05880_001 I
GSMUA_AchrUn_randomG18750_001 Musa acuminata GSMUA_AchrUn_randomG18750_001 I
gw1.104.128.1 Physcomitrella patens gw1.104.128.1 I
gw1.15.242.1 Coccomyxa subellipsoidea C169 gw1.15.242.1 I
gw1.27.80.1 Physcomitrella patens gw1.27.80.1 I
gw1.29.164.1 Physcomitrella patens gw1.29.164.1 I
gw1.29.165.1 Physcomitrella patens gw1.29.165.1 I
gw1.37.160.1 Volvox carteri gw1.37.160.1 I
LPERR03G08040 Leersia perrieri LPERR03G08040 I
LPERR05G13030 Leersia perrieri LPERR05G13030 I
Lus10010442.g Linum usitatissimum Lus10010442.g I
Lus10012102.g Linum usitatissimum Lus10012102.g I
Lus10027291.g Linum usitatissimum Lus10027291.g I
Lus10038996.g Linum usitatissimum Lus10038996.g I
MDP0000669078 Malus domestica MDP0000669078 I
MDP0000672486 Malus domestica MDP0000672486 I
MDP0000846313 Malus domestica MDP0000846313 I
mgf014801m Mimulus guttatus mgf014801m I
MLOC_24056 Hordeum vulgare MLOC_24056 I
MLOC_24962 Hordeum vulgare MLOC_24962 I
MLOC_37446 Hordeum vulgare MLOC_37446 I
MLOC_76165 Hordeum vulgare MLOC_76165 I
MTR_4g064730 Medicago truncatula MTR_4g064730 I
MTR_7g089010 Medicago truncatula MTR_7g089010 I
MYBC1 Arabidopsis thaliana AT2G40970 I
MYBC1 Arabidopsis lyrata scaffold_402901.1 I
OB03G19140 Oryza brachyantha OB03G19140 I
OBART03G08950 Oryza barthii OBART03G08950 I
OGLUM03G09080 Oryza glumaepatula OGLUM03G09080 I
OLONG_001321 Oryza longistaminata OLONG_001321 I
OLONG_002370 Oryza longistaminata OLONG_002370 I
OMERI03G08390 Oryza meridionalis OMERI03G08390 I
OMERI05G06680 Oryza meridionalis OMERI05G06680 I
ONIVA05G17050 Oryza nivara ONIVA05G17050 I
ONIVA06G01160 Oryza nivara ONIVA06G01160 I
OPUNC03G08640 Oryza punctata OPUNC03G08640 I
OPUNC05G14480 Oryza punctata OPUNC05G14480 I
orange1.1g020690m.g Citrus sinensis orange1.1g020690m.g I
orange1.1g047187m.g Citrus sinensis orange1.1g047187m.g I
ORGLA03G0086800 Oryza glaberrima ORGLA03G0086800 I
ORGLA05G0141400 Oryza glaberrima ORGLA05G0141400 I
ORUFI03G09090 Oryza rufipogon ORUFI03G09090 I
OS05G0412000 Oryza sativa OS05G0412000 I
Pavir.Ba03246 Panicum virgatum Pavir.Ba03246 I
Pavir.Ea04181 Panicum virgatum Pavir.Ea04181 I
Pavir.Eb04079 Panicum virgatum Pavir.Eb04079 I
Pavir.Ia04946 Panicum virgatum Pavir.Ia04946 I
Pavir.Ib00921 Panicum virgatum Pavir.Ib00921 I
PCL1 Arabidopsis thaliana AT3G46640 I
PCL1 Arabidopsis lyrata fgenesh2_kg.5__1030__AT3G46640.2 I
PGSC0003DMG400002144 Solanum tuberosum PGSC0003DMG400002144 I
PGSC0003DMG400007174 Solanum tuberosum PGSC0003DMG400007174 I
PGSC0003DMG400028100 Solanum tuberosum PGSC0003DMG400028100 I
PGSC0003DMG400030328 Solanum tuberosum PGSC0003DMG400030328 I
PK02601.1 Cannabis sativa PK02601.1 I
PK05290.1 Cannabis sativa PK05290.1 I
PK23977.1 Cannabis sativa PK23977.1 I
Pm000693 Prunus mume Pm000693 I
Pm031149 Prunus mume Pm031149 I
POPTR_0006s03340 Populus trichocarpa POPTR_0006s03340 I
POPTR_0008s13490 Populus trichocarpa POPTR_0008s13490 I
POPTR_0009s03990 Populus trichocarpa POPTR_0009s03990 I
POPTR_0016s03240 Populus trichocarpa POPTR_0016s03240 I
PRUPE_ppa008837mg Prunus persica PRUPE_ppa008837mg I
PRUPE_ppa026577mg Prunus persica PRUPE_ppa026577mg I
RR21 Oryza indica BGIOSGA012149 I
RR21 Oryza sativa OS03G0224200 I
SapurV1A.0015s0530 Salix purpurea SapurV1A.0015s0530 I
SapurV1A.0041s0350 Salix purpurea SapurV1A.0041s0350 I
SapurV1A.0128s0090 Salix purpurea SapurV1A.0128s0090 I
SapurV1A.0159s0180 Salix purpurea SapurV1A.0159s0180 I
SapurV1A.1916s0020 Salix purpurea SapurV1A.1916s0020 I
Sb01g042400 Sorghum bicolor Sb01g042400 I
Sb03g047330 Sorghum bicolor Sb03g047330 I
Sb09g020340 Sorghum bicolor Sb09g020340 I
scaffold_301238.1 Arabidopsis lyrata scaffold_301238.1 I
scaffold_600469.1 Arabidopsis lyrata scaffold_600469.1 I
SELMODRAFT_36646 Selaginella moellendorffii SELMODRAFT_36646 I
Si002653m.g Setaria italica Si002653m.g I
Si034517m.g Setaria italica Si034517m.g I
Solyc06g005680.2 Solanum lycopersicum Solyc06g005680.2 I
Solyc06g076350.2 Solanum lycopersicum Solyc06g076350.2 I
Solyc10g078310.1 Solanum lycopersicum Solyc10g078310.1 I
Solyc10g080960.1 Solanum lycopersicum Solyc10g080960.1 I
TCM_041791 Theobroma cacao TCM_041791 I
TCM_045790 Theobroma cacao TCM_045790 I
Thhalv10002605m.g Eutrema salsugineum Thhalv10002605m.g I
Thhalv10004402m.g Eutrema salsugineum Thhalv10004402m.g I
Thhalv10014387m.g Eutrema salsugineum Thhalv10014387m.g I
Thhalv10017945m.g Eutrema salsugineum Thhalv10017945m.g I
Thhalv10021133m.g Eutrema salsugineum Thhalv10021133m.g I
TRAES3BF076800040CFD_g Triticum aestivum TRAES3BF076800040CFD_g I
Traes_4AS_6486B493A Triticum aestivum Traes_4AS_6486B493A I
Traes_4BL_941E7DE4D Triticum aestivum Traes_4BL_941E7DE4D I
Traes_4DL_2527CA8BF Triticum aestivum Traes_4DL_2527CA8BF I
Traes_6BL_790C095EE Triticum aestivum Traes_6BL_790C095EE I
Traes_6DL_D1C9CE275 Triticum aestivum Traes_6DL_D1C9CE275 I
TRIUR3_25342 Triticum urartu TRIUR3_25342 I
VIT_06s0004g05120 Vitis vinifera VIT_06s0004g05120 I
VIT_08s0040g00900 Vitis vinifera VIT_08s0040g00900 I