Carubv10024931m.g (Capsella rubella)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Carubv10024931m.g T286436_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT5G05090
M02305_2.00 		Arabidopsis thaliana
NHAGATHCKNN
NNMGDATCTDN		 PBM
Weirauch et al.(2014)
pTH7104 		0.827 0.935
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10024931m Myb 19 68

Links

Other Myb/SANT family TFs
Other Capsella rubella TFs

176 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cagra.0995s0002 Capsella grandiflora Cagra.0995s0002 I 0.909
OMERI05G06680 Oryza meridionalis OMERI05G06680 I 0.827
Cagra.1504s0014 Capsella grandiflora Cagra.1504s0014 I 0.827
Cagra.1642s0062 Capsella grandiflora Cagra.1642s0062 I 0.827
Carubv10003130m.g Capsella rubella Carubv10003130m.g I 0.827
ONIVA05G17050 Oryza nivara ONIVA05G17050 I 0.827
Bostr.9345s0035 Boechera stricta Bostr.9345s0035 I 0.827
OPUNC05G14480 Oryza punctata OPUNC05G14480 I 0.827
Cagra.0834s0003 Capsella grandiflora Cagra.0834s0003 I 0.827
Carubv10014134m.g Capsella rubella Carubv10014134m.g I 0.827
MTR_7g089010 Medicago truncatula MTR_7g089010 I 0.827
Eucgr.K01670 Eucalyptus grandis Eucgr.K01670 I 0.827
GSMUA_Achr8G05880_001 Musa acuminata GSMUA_Achr8G05880_001 I 0.827
GSMUA_Achr5G27500_001 Musa acuminata GSMUA_Achr5G27500_001 I 0.827
Ca_07144 Cicer arietinum Ca_07144 I 0.827
MLOC_24056 Hordeum vulgare MLOC_24056 I 0.827
Carubv10024859m.g Capsella rubella Carubv10024859m.g I 0.827
Ciclev10012203m.g Citrus clementina Ciclev10012203m.g I 0.827
Eucgr.A02201 Eucalyptus grandis Eucgr.A02201 I 0.827
ORGLA05G0141400 Oryza glaberrima ORGLA05G0141400 I 0.827
Bostr.27991s0013 Boechera stricta Bostr.27991s0013 I 0.827
Solyc10g078310.1 Solanum lycopersicum Solyc10g078310.1 I 0.827
cassava20582.m1 Manihot esculenta cassava20582.m1 I 0.827
Cucsa.140020 Cucumis sativus Cucsa.140020 I 0.827
Cucsa.358530 Cucumis sativus Cucsa.358530 I 0.827
30180.m001019 Ricinus communis 30180.m001019 I 0.827
Pm031149 Prunus mume Pm031149 I 0.827
VIT_08s0040g00900 Vitis vinifera VIT_08s0040g00900 I 0.827
Cla012286 Citrullus lanatus Cla012286 I 0.827
Cla017714 Citrullus lanatus Cla017714 I 0.827
scaffold_600469.1 Arabidopsis lyrata scaffold_600469.1 I 0.827
MYBC1 Arabidopsis lyrata scaffold_402901.1 I 0.827
Bostr.13129s0456 Boechera stricta Bostr.13129s0456 I 0.827
OS05G0412000 Oryza sativa OS05G0412000 I 0.827
Bostr.19424s0999 Boechera stricta Bostr.19424s0999 I 0.827
PGSC0003DMG400007174 Solanum tuberosum PGSC0003DMG400007174 I 0.827
Aquca_009_00074 Aquilegia coerulea Aquca_009_00074 I 0.827
scaffold_301238.1 Arabidopsis lyrata scaffold_301238.1 I 0.827
PRUPE_ppa026577mg Prunus persica PRUPE_ppa026577mg I 0.827
mgf014801m Mimulus guttatus mgf014801m I 0.827
evm.TU.supercontig_92.70 Carica papaya evm.TU.supercontig_92.70 I 0.827
LPERR05G13030 Leersia perrieri LPERR05G13030 I 0.827
Bo5g019990 Brassica oleracea Bo5g019990 I 0.827
Bo4g012890 Brassica oleracea Bo4g012890 I 0.827
Thhalv10014387m.g Eutrema salsugineum Thhalv10014387m.g I 0.827
Bo5g137150 Brassica oleracea Bo5g137150 I 0.827
GSMUA_Achr2G01920_001 Musa acuminata GSMUA_Achr2G01920_001 I 0.827
Bra009087 Brassica rapa Bra009087 I 0.827
Bra005837 Brassica rapa Bra005837 I 0.827
Bra004593 Brassica rapa Bra004593 I 0.827
Bo3g003150 Brassica oleracea Bo3g003150 I 0.827
Thhalv10017945m.g Eutrema salsugineum Thhalv10017945m.g I 0.827
chr1.CM0269.130.nd Lotus japonicus chr1.CM0269.130.nd I 0.827
AT3G10760 Arabidopsis thaliana AT3G10760 I 0.827
MYBC1 Arabidopsis thaliana AT2G40970 I 0.827
AT5G05090 Arabidopsis thaliana AT5G05090 D 0.827
PK23977.1 Cannabis sativa PK23977.1 I 0.827
BGIOSGA018058 Oryza indica BGIOSGA018058 I 0.827
Thhalv10021133m.g Eutrema salsugineum Thhalv10021133m.g I 0.827
Bra034144 Brassica rapa Bra034144 I 0.827
Bo9g177390 Brassica oleracea Bo9g177390 I 0.827
Gorai.002G230800 Gossypium raimondii Gorai.002G230800 I 0.827
GLYMA03G27890 Glycine max GLYMA03G27890 I 0.827
gene17673-v1.0-hybrid Fragaria vesca gene17673-v1.0-hybrid I 0.827
GRMZM2G398055 Zea mays GRMZM2G398055 I 0.827
Lus10012102.g Linum usitatissimum Lus10012102.g I 0.827
Gorai.007G351500 Gossypium raimondii Gorai.007G351500 I 0.827
Lus10010442.g Linum usitatissimum Lus10010442.g I 0.827
GLYMA19G30700 Glycine max GLYMA19G30700 I 0.827
GSMUA_Achr11G14170_001 Musa acuminata GSMUA_Achr11G14170_001 I 0.827
GLYMA02G21820 Glycine max GLYMA02G21820 I 0.827
orange1.1g020690m.g Citrus sinensis orange1.1g020690m.g I 0.827
BRADI2G25380 Brachypodium distachyon BRADI2G25380 I 0.827
Lus10038996.g Linum usitatissimum Lus10038996.g I 0.827
MDP0000846313 Malus domestica MDP0000846313 I 0.827
Lus10027291.g Linum usitatissimum Lus10027291.g I 0.827
Sb09g020340 Sorghum bicolor Sb09g020340 I 0.823
TCM_045790 Theobroma cacao TCM_045790 I 0.809
Bra029866 Brassica rapa Bra029866 I 0.805
EuGene.0600010100 Micromonas sp RCC299 EuGene.0600010100 I 0.787
AMTR_s00101p00128190 Amborella trichopoda AMTR_s00101p00128190 I 0.787
gw1.104.128.1 Physcomitrella patens gw1.104.128.1 I 0.787
gw1.29.165.1 Physcomitrella patens gw1.29.165.1 I 0.787
POPTR_0006s03340 Populus trichocarpa POPTR_0006s03340 I 0.787
SapurV1A.1916s0020 Salix purpurea SapurV1A.1916s0020 I 0.787
POPTR_0016s03240 Populus trichocarpa POPTR_0016s03240 I 0.787
gw1.29.164.1 Physcomitrella patens gw1.29.164.1 I 0.787
SELMODRAFT_36646 Selaginella moellendorffii SELMODRAFT_36646 I 0.787
SapurV1A.0159s0180 Salix purpurea SapurV1A.0159s0180 I 0.787
gw1.27.80.1 Physcomitrella patens gw1.27.80.1 I 0.787
Bo1g141480 Brassica oleracea Bo1g141480 I 0.783
GSMUA_Achr10G12590_001 Musa acuminata GSMUA_Achr10G12590_001 I 0.772
EuGene.0000090108 Micromonas pusilla EuGene.0000090108 I 0.772
Solyc10g080960.1 Solanum lycopersicum Solyc10g080960.1 I 0.767
PGSC0003DMG400028100 Solanum tuberosum PGSC0003DMG400028100 I 0.767
GRMZM2G471600 Zea mays GRMZM2G471600 I 0.767
PCL1 Arabidopsis lyrata fgenesh2_kg.5__1030__AT3G46640.2 I 0.745
fgenesh2_kg.8__1908__AT5G59570.1 Arabidopsis lyrata fgenesh2_kg.8__1908__AT5G59570.1 I 0.745
GLYMA11G14490 Glycine max GLYMA11G14490 I 0.745
GLYMA12G06406 Glycine max GLYMA12G06406 I 0.745
MDP0000672486 Malus domestica MDP0000672486 I 0.745
BRADI2G62067 Brachypodium distachyon BRADI2G62067 I 0.745
Pavir.Ea04181 Panicum virgatum Pavir.Ea04181 I 0.745
orange1.1g047187m.g Citrus sinensis orange1.1g047187m.g I 0.745
Cagra.0448s0013 Capsella grandiflora Cagra.0448s0013 I 0.745
Gorai.009G097100 Gossypium raimondii Gorai.009G097100 I 0.745
Pavir.Ba03246 Panicum virgatum Pavir.Ba03246 I 0.745
Carubv10017603m.g Capsella rubella Carubv10017603m.g I 0.745
Gorai.001G112200 Gossypium raimondii Gorai.001G112200 I 0.745
gene30204-v1.0-hybrid Fragaria vesca gene30204-v1.0-hybrid I 0.745
evm.TU.supercontig_81.106 Carica papaya evm.TU.supercontig_81.106 I 0.745
GSMUA_Achr5G07060_001 Musa acuminata GSMUA_Achr5G07060_001 I 0.745
Eucgr.B02313 Eucalyptus grandis Eucgr.B02313 I 0.745
Gorai.003G129100 Gossypium raimondii Gorai.003G129100 I 0.745
MTR_4g064730 Medicago truncatula MTR_4g064730 I 0.745
Ca_16282 Cicer arietinum Ca_16282 I 0.745
MLOC_37446 Hordeum vulgare MLOC_37446 I 0.745
Ciclev10028658m.g Citrus clementina Ciclev10028658m.g I 0.745
Pavir.Eb04079 Panicum virgatum Pavir.Eb04079 I 0.745
PGSC0003DMG400002144 Solanum tuberosum PGSC0003DMG400002144 I 0.745
BOA Arabidopsis thaliana AT5G59570 I 0.745
AMTR_s00012p00251530 Amborella trichopoda AMTR_s00012p00251530 I 0.745
PK05290.1 Cannabis sativa PK05290.1 I 0.745
Bo1g070860 Brassica oleracea Bo1g070860 I 0.745
Cucsa.117700 Cucumis sativus Cucsa.117700 I 0.745
PCL1 Arabidopsis thaliana AT3G46640 I 0.745
TCM_041791 Theobroma cacao TCM_041791 I 0.745
Cla008353 Citrullus lanatus Cla008353 I 0.745
VIT_06s0004g05120 Vitis vinifera VIT_06s0004g05120 I 0.745
TRAES3BF076800040CFD_g Triticum aestivum TRAES3BF076800040CFD_g I 0.745
Pm000693 Prunus mume Pm000693 I 0.745
Solyc06g005680.2 Solanum lycopersicum Solyc06g005680.2 I 0.745
Si002653m.g Setaria italica Si002653m.g I 0.745
Bra033809 Brassica rapa Bra033809 I 0.745
Aquca_003_00124 Aquilegia coerulea Aquca_003_00124 I 0.745
SapurV1A.0128s0090 Salix purpurea SapurV1A.0128s0090 I 0.745
GSMUA_Achr10G02420_001 Musa acuminata GSMUA_Achr10G02420_001 I 0.745
POPTR_0009s03990 Populus trichocarpa POPTR_0009s03990 I 0.745
PRUPE_ppa008837mg Prunus persica PRUPE_ppa008837mg I 0.745
Bo3g132770 Brassica oleracea Bo3g132770 I 0.745
Thhalv10002605m.g Eutrema salsugineum Thhalv10002605m.g I 0.745
Sb03g047330 Sorghum bicolor Sb03g047330 I 0.745
Bra018204 Brassica rapa Bra018204 I 0.745
Bostr.18473s0293 Boechera stricta Bostr.18473s0293 I 0.745
Carubv10026895m.g Capsella rubella Carubv10026895m.g I 0.742
Cagra.1317s0057 Capsella grandiflora Cagra.1317s0057 I 0.742
Solyc06g076350.2 Solanum lycopersicum Solyc06g076350.2 I 0.739
GSMUA_AchrUn_randomG18750_001 Musa acuminata GSMUA_AchrUn_randomG18750_001 I 0.739
PGSC0003DMG400030328 Solanum tuberosum PGSC0003DMG400030328 I 0.739
GRMZM2G067702 Zea mays GRMZM2G067702 I 0.737
Aquca_009_00923 Aquilegia coerulea Aquca_009_00923 I 0.729
estExt_fgenesh2_pg.C_Chr_120081 Micromonas sp RCC299 estExt_fgenesh2_pg.C_Chr_120081 I 0.728
SapurV1A.0041s0350 Salix purpurea SapurV1A.0041s0350 I 0.727
MDP0000669078 Malus domestica MDP0000669078 I 0.727
est_orfs.10_1861_4270447:1 Micromonas pusilla est_orfs.10_1861_4270447:1 I 0.713
Bostr.26833s0280 Boechera stricta Bostr.26833s0280 I 0.710
cassava19434.valid.m1 Manihot esculenta cassava19434.valid.m1 I 0.685
cassava34353.m1 Manihot esculenta cassava34353.m1 I 0.685
29751.m001898 Ricinus communis 29751.m001898 I 0.685
OLONG_001321 Oryza longistaminata OLONG_001321 I 0.683
F775_08927 Aegilops tauschii F775_08927 I 0.683
MLOC_24962 Hordeum vulgare MLOC_24962 I 0.683
Si002016m.g Setaria italica Si002016m.g I 0.662
BGIOSGA004786 Oryza indica BGIOSGA004786 I 0.662
Sb03g039610 Sorghum bicolor Sb03g039610 I 0.662
ORUFI01G40390 Oryza rufipogon ORUFI01G40390 I 0.662
OMERI01G34110 Oryza meridionalis OMERI01G34110 I 0.662
OGLUM01G41000 Oryza glumaepatula OGLUM01G41000 I 0.662
OBART01G37040 Oryza barthii OBART01G37040 I 0.662
LPERR01G31830 Leersia perrieri LPERR01G31830 I 0.662
ONIVA01G41940 Oryza nivara ONIVA01G41940 I 0.662
OPUNC01G35910 Oryza punctata OPUNC01G35910 I 0.662
Pavir.J06465 Panicum virgatum Pavir.J06465 I 0.662
OS01G0844900 Oryza sativa OS01G0844900 I 0.662
ORGLA01G0309000 Oryza glaberrima ORGLA01G0309000 I 0.662
Pavir.J10623 Panicum virgatum Pavir.J10623 I 0.662