CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

Bo3g081390 *(Brassica oleracea)* TCR/CxC
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF03638 (TCR)	IPR005172	Bo3g081390	T345214_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
TCX2 M07300_2.00	Arabidopsis thaliana	WWTYVAAATTYRAAW	WTTYRAATTTBRAWW	Dap-seq OMalley et al.(2016) TCX2_col_a	0.672	0.974
TCX2 M07301_2.00	Arabidopsis thaliana	TTYVAAATTYRAAW	WTTYRAATTTBRAA	Dap-seq OMalley et al.(2016) TCX2_colamp_a	0.672	0.974
TCX3 M01087_2.00	Arabidopsis thaliana	NNDTTYAAAH	DTTTRAAHNN	PBM Sullivan et al.(2014) pTH7218	0.672	0.947
TCX3 M02522_2.00	Arabidopsis thaliana	WTTYAAAH	DTTTRAAW	PBM Weirauch et al.(2014) pTH7421	0.672	0.947
TCX3 M07297_2.00	Arabidopsis thaliana	DWTTYRAAWTTBAAW	WTTVAAATTYRAAWH	Dap-seq OMalley et al.(2016) SOL1_colamp_a	0.672	0.947
TCX3 M07298_2.00	Arabidopsis thaliana	WTWWAAAATTYAAAW	WTTTRAATTTTWWAW	Dap-seq OMalley et al.(2016) SOL1_col	0.672	0.947
PK22848.1 M02532_2.00	Cannabis sativa	NNNYNAAATTTNN	NNAAATTTNRNNN	PBM Weirauch et al.(2014) pTH9724	0.672	0.934
TSO1 M07299_2.00	Arabidopsis thaliana	WWWTWDAAATTYAAA	TTTRAATTTHWAWWW	Dap-seq OMalley et al.(2016) TSO1_col_a	0.672	0.908
BRADI1G55710 M02525_2.00	Brachypodium distachyon	NVTBYRVABN	NVTBYRVABN	PBM Weirauch et al.(2014) pTH9241	0.672	0.868
TCX4 M02521_2.00	Arabidopsis thaliana	DWTTYRAAWH	DWTTYRAAWH	PBM Weirauch et al.(2014) pTH7573	0.672	0.763
AT5G25790 M01319_2.00	Arabidopsis thaliana	NHYRAAHN	NDTTYRDN	PBM Lambert et al.(2019) pTH11533	0.672	0.658
fgenesh1_pg.C_Chr_09.0001000301 M02533_2.00	Ostreococcus tauri	NNNNNRHNN	NNDYNNNNN	PBM Weirauch et al.(2014) pTH9457	0.672	0.658
AT2G20110 M02520_2.00	Arabidopsis thaliana	DTTTAAAH	DTTTAAAH	PBM Weirauch et al.(2014) pTH7914	0.672	0.632
TCX5 M02523_2.00	Arabidopsis thaliana	NRTTCAAAYN	NRTTTGAAYN	PBM Weirauch et al.(2014) pTH8164	0.672	0.632
fgeneshCV_pg.C_scaffold_18000164 M02534_2.00	Chlorella vulgaris	NNNNDYRAAH	DTTYRHNNNN	PBM Weirauch et al.(2014) pTH9252	0.672	0.632
AT2G20110 M07295_2.00	Arabidopsis thaliana	WWHWAADATTYAAAW	WTTTRAATHTTWDWW	Dap-seq OMalley et al.(2016) AT2G20110_col_a	0.672	0.632
AT2G20110 M07296_2.00	Arabidopsis thaliana	WWHNAAATTYAAAHN	NDTTTRAATTTNDWW	Dap-seq OMalley et al.(2016) AT2G20110_colamp_a	0.672	0.632
lin54 M02526_2.00	Danio rerio	NHTYRAAH	DTTYRADN	PBM Weirauch et al.(2014) pTH8399	0.672	0.592
ENSTSYG00000005291 M02528_2.00	Tarsius syrichta	NNWDHDHWNN	NNWDHDHWNN	PBM Weirauch et al.(2014) pTH9366	0.672	0.579
LIN54 M02527_2.00	Gallus gallus	NRTTYAAAH	DTTTRAAYN	PBM Weirauch et al.(2014) pTH8566	0.672	0.566
GE12548 M02529_2.00	Drosophila yakuba	DTTYAAAY	RTTTRAAH	PBM Weirauch et al.(2014) pTH9262	0.672	0.566
GSPATT00010696001 M02530_2.00	Paramecium tetraurelia	NNBRAAHN	NDTTYVNN	PBM Weirauch et al.(2014) pTH8720	0.672	0.566
SPU_025306 M02531_2.00	Strongylocentrotus purpuratus	NNNNWYRAAH	DTTYRWNNNN	PBM Weirauch et al.(2014) pTH9286	0.672	0.566
XP_002124866.1 M01321_2.00	Ciona intestinalis	NDTTYRAAN	NTTYRAAHN	PBM Lambert et al.(2019) pTH9835	0.672	0.566
gw1.20.00.89.1 M02535_2.00	Ostreococcus tauri	WNYWBVWRNW	WNYWBVWRNW	PBM Weirauch et al.(2014) pTH9647	0.672	0.566
NEMVEDRAFT_v1g111410 M01320_2.00	Nematostella vectensis	NNNNYRWRN	NYWYRNNNN	PBM Lambert et al.(2019) pTH9771	0.672	0.553
PK27683.1 M01322_2.00	Cannabis sativa	NDTTYAAAH	DTTTRAAHN	PBM Lambert et al.(2019) pTH11347	0.672	0.553
BGIBMGA008956 M02524_2.00	Bombyx mori	AATTTAAAW	WTTTAAATT	PBM Weirauch et al.(2014) pTH9238	0.672	0.539
For this family, TFs with SR scores > 0.660* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
Bo3g081390.1	TCR/CxC	388	425	CKRCNCKKSKCLKLYCECFAAGVYCIEPCSCVDCFNKP
Bo3g081390.1	TCR/CxC	475	512	KRGCNCKKSNCLKKYCECYQSGVGCSINCRCEGCKNAF

Links
Other TCR/CxC family TFs
Other *Brassica oleracea* TFs

1213 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
ASU_00939	Ascaris suum	ASU_00939	N
Bm2393	Brugia malayi	Bm2393	N
Bm7765	Brugia malayi	Bm7765	N
Bm9369	Brugia malayi	Bm9369	N
BTMF_0001523401	Brugia timori	BTMF_0001523401	N
CLEC008450	Cimex lectularius	CLEC008450	N
D918_05288	Trichuris suis	D918_05288	N
EEL_0000724001	Elaeophora elaphi	EEL_0000724001	N
ENSCSAVG00000009396	Ciona savignyi	ENSCSAVG00000009396	N
GI24041	Drosophila mojavensis	FBgn0146764	N
GJ23670	Drosophila virilis	FBgn0210767	N
GK13168	Drosophila willistoni	FBgn0215177	N
GPLIN_000839700	Globodera pallida	GPLIN_000839700	N
HMEL006186	Heliconius melpomene	HMEL006186	N
ISCW005293	Ixodes scapularis	ISCW005293	N
LOAG_11340	Loa loa	LOAG_11340	N
nAv.1.0.1.g05839	Acanthocheilonema viteae	nAv.1.0.1.g05839	N
nDi.2.2.2.g01867	Dirofilaria immitis	nDi.2.2.2.g01867	N
nDi.2.2.2.g06671	Dirofilaria immitis	nDi.2.2.2.g06671	N
nDi.2.2.2.g10298	Dirofilaria immitis	nDi.2.2.2.g10298	N
nLs.2.1.2.g07200	Litomosoides sigmodontis	nLs.2.1.2.g07200	N
nLs.2.1.2.g08566	Litomosoides sigmodontis	nLs.2.1.2.g08566	N
nOo.2.0.1.g03638	Onchocerca ochengi	nOo.2.0.1.g03638	N
nOo.2.0.1.g07918	Onchocerca ochengi	nOo.2.0.1.g07918	N
OFLC_0000194401	Onchocerca flexuosa	OFLC_0000194401	N
PTRK_0001310900	Parastrongyloides trichosuri	PTRK_0001310900	N
SMAR009325	Strigamia maritima	SMAR009325	N
SMUV_0000135001	Syphacia muris	SMUV_0000135001	N
SNAPOd2T00014396001	Oikopleura dioica	SNAPOd2T00014396001	N
SPAL_0001274100	Strongyloides papillosus	SPAL_0001274100	N
SSTP_0000878000	Strongyloides stercoralis	SSTP_0000878000	N
SSTP_0001127200	Strongyloides stercoralis	SSTP_0001127200	N
SVE_0827400	Strongyloides venezuelensis	SVE_0827400	N
TCLT_0000189901	Thelazia callipaeda	TCLT_0000189901	N
TMUE_s0089001400	Trichuris muris	TMUE_s0089001400	N
WBGene00238178	Onchocerca volvulus	WBGene00238178	N
WBGene00239172	Onchocerca volvulus	WBGene00239172	N
WUBG_00348	Wuchereria bancrofti	WUBG_00348	N
WUBG_03167	Wuchereria bancrofti	WUBG_03167	N

Bo3g081390 (Brassica oleracea) TCR/CxC

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

1213 Related TFs

Bo3g081390 **(Brassica oleracea)
TCR/CxC**