cassava8212.valid.m1 (Manihot esculenta)
TCR/CxC

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03638 (TCR) IPR005172 cassava8212.valid.m1 T345953_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT2G20110
M02520_2.00 		Arabidopsis thaliana
DTTTAAAH
DTTTAAAH		 PBM
Weirauch et al.(2014)
pTH7914 		0.672 0.947
TCX5
M02523_2.00 		Arabidopsis thaliana
NRTTCAAAYN
NRTTTGAAYN		 PBM
Weirauch et al.(2014)
pTH8164 		0.672 0.947
AT2G20110
M07295_2.00 		Arabidopsis thaliana
WWHWAADATTYAAAW
WTTTRAATHTTWDWW		 Dap-seq
OMalley et al.(2016)
AT2G20110_col_a 		0.672 0.947
AT2G20110
M07296_2.00 		Arabidopsis thaliana
WWHNAAATTYAAAHN
NDTTTRAATTTNDWW		 Dap-seq
OMalley et al.(2016)
AT2G20110_colamp_a 		0.672 0.947
fgeneshCV_pg.C_scaffold_18000164
M02534_2.00 		Chlorella vulgaris
NNNNDYRAAH
DTTYRHNNNN		 PBM
Weirauch et al.(2014)
pTH9252 		0.672 0.840
AT5G25790
M01319_2.00 		Arabidopsis thaliana
NHYRAAHN
NDTTYRDN		 PBM
Lambert et al.(2019)
pTH11533 		0.672 0.813
lin54
M02526_2.00 		Danio rerio
NHTYRAAH
DTTYRADN		 PBM
Weirauch et al.(2014)
pTH8399 		0.672 0.680
NEMVEDRAFT_v1g111410
M01320_2.00 		Nematostella vectensis
NNNNYRWRN
NYWYRNNNN		 PBM
Lambert et al.(2019)
pTH9771 		0.672 0.680
SPU_025306
M02531_2.00 		Strongylocentrotus purpuratus
NNNNWYRAAH
DTTYRWNNNN		 PBM
Weirauch et al.(2014)
pTH9286 		0.672 0.680
gw1.20.00.89.1
M02535_2.00 		Ostreococcus tauri
WNYWBVWRNW
WNYWBVWRNW		 PBM
Weirauch et al.(2014)
pTH9647 		0.672 0.680
LIN54
M02527_2.00 		Gallus gallus
NRTTYAAAH
DTTTRAAYN		 PBM
Weirauch et al.(2014)
pTH8566 		0.672 0.667
fgenesh1_pg.C_Chr_09.0001000301
M02533_2.00 		Ostreococcus tauri
NNNNNRHNN
NNDYNNNNN		 PBM
Weirauch et al.(2014)
pTH9457 		0.672 0.667
XP_002124866.1
M01321_2.00 		Ciona intestinalis
NDTTYRAAN
NTTYRAAHN		 PBM
Lambert et al.(2019)
pTH9835 		0.672 0.653
ENSTSYG00000005291
M02528_2.00 		Tarsius syrichta
NNWDHDHWNN
NNWDHDHWNN		 PBM
Weirauch et al.(2014)
pTH9366 		0.672 0.640
TCX3
M01087_2.00 		Arabidopsis thaliana
NNDTTYAAAH
DTTTRAAHNN		 PBM
Sullivan et al.(2014)
pTH7218 		0.672 0.627
TCX3
M02522_2.00 		Arabidopsis thaliana
WTTYAAAH
DTTTRAAW		 PBM
Weirauch et al.(2014)
pTH7421 		0.672 0.627
TCX3
M07297_2.00 		Arabidopsis thaliana
DWTTYRAAWTTBAAW
WTTVAAATTYRAAWH		 Dap-seq
OMalley et al.(2016)
SOL1_colamp_a 		0.672 0.627
TCX3
M07298_2.00 		Arabidopsis thaliana
WTWWAAAATTYAAAW
WTTTRAATTTTWWAW		 Dap-seq
OMalley et al.(2016)
SOL1_col 		0.672 0.627
BGIBMGA008956
M02524_2.00 		Bombyx mori
AATTTAAAW
WTTTAAATT		 PBM
Weirauch et al.(2014)
pTH9238 		0.672 0.613
TCX2
M07300_2.00 		Arabidopsis thaliana
WWTYVAAATTYRAAW
WTTYRAATTTBRAWW		 Dap-seq
OMalley et al.(2016)
TCX2_col_a 		0.672 0.613
TCX2
M07301_2.00 		Arabidopsis thaliana
TTYVAAATTYRAAW
WTTYRAATTTBRAA		 Dap-seq
OMalley et al.(2016)
TCX2_colamp_a 		0.672 0.613
BRADI1G55710
M02525_2.00 		Brachypodium distachyon
NVTBYRVABN
NVTBYRVABN		 PBM
Weirauch et al.(2014)
pTH9241 		0.672 0.600
GE12548
M02529_2.00 		Drosophila yakuba
DTTYAAAY
RTTTRAAH		 PBM
Weirauch et al.(2014)
pTH9262 		0.672 0.600
PK22848.1
M02532_2.00 		Cannabis sativa
NNNYNAAATTTNN
NNAAATTTNRNNN		 PBM
Weirauch et al.(2014)
pTH9724 		0.672 0.587
TSO1
M07299_2.00 		Arabidopsis thaliana
WWWTWDAAATTYAAA
TTTRAATTTHWAWWW		 Dap-seq
OMalley et al.(2016)
TSO1_col_a 		0.672 0.587
TCX4
M02521_2.00 		Arabidopsis thaliana
DWTTYRAAWH
DWTTYRAAWH		 PBM
Weirauch et al.(2014)
pTH7573 		0.672 0.573
GSPATT00010696001
M02530_2.00 		Paramecium tetraurelia
NNBRAAHN
NDTTYVNN		 PBM
Weirauch et al.(2014)
pTH8720 		0.672 0.560
PK27683.1
M01322_2.00 		Cannabis sativa
NDTTYAAAH
DTTTRAAHN		 PBM
Lambert et al.(2019)
pTH11347 		0.672 0.547
For this family, TFs with SR scores > 0.660 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava8212.valid.m1 TCR/CxC 121 157
cassava8212.valid.m1 TCR/CxC 206 243

Links

Other TCR/CxC family TFs
Other Manihot esculenta TFs

1213 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R002771 Calypte anna Aan_R002771 I
Aan_R003869 Calypte anna Aan_R003869 I
Aan_R003872 Calypte anna Aan_R003872 I
Aan_R015659 Calypte anna Aan_R015659 I
AARA003790 Anopheles arabiensis AARA003790 I
AAT72003 Xenopus tropicalis AAT72003 I
AB04741.1 Alternaria brassicicola AB04741.1 I
Afo_R008293 Aptenodytes forsteri Afo_R008293 I
Afo_R009185 Aptenodytes forsteri Afo_R009185 I
Afo_R009272 Aptenodytes forsteri Afo_R009272 I
Afo_R011092 Aptenodytes forsteri Afo_R011092 I
AGAP009986 Anopheles gambiae AGAP009986 D
Alligator_sinensis_CCG002846.1 Alligator sinensis Alligator_sinensis_CCG002846.1 I
Alligator_sinensis_CCG006640.1 Alligator sinensis Alligator_sinensis_CCG006640.1 I
Alligator_sinensis_CCG010381.1 Alligator sinensis Alligator_sinensis_CCG010381.1 I
AMAM020176 Anopheles maculatus AMAM020176 I
Aqu1.225495 Amphimedon queenslandica Aqu1.225495 I
ATEG_05203 Aspergillus terreus CADATEAG00005116 I
A_07284 Schistosoma haematobium A_07284 I
Brh_R000015 Buceros rhinoceros Brh_R000015 I
Brh_R010356 Buceros rhinoceros Brh_R010356 I
CapteG100741 Capitella teleta CapteG100741 I
CapteG49895 Capitella teleta CapteG49895 I
CapteG70907 Capitella teleta CapteG70907 I
CapteG88319 Capitella teleta CapteG88319 I
CBG25749 Caenorhabditis briggsae CBG25749 I
CCM_02544 Cordyceps militaris CCM_02544 I
CGI_10011802 Crassostrea gigas CGI_10011802 I
Cmyd_10006302 Chelonia mydas Cmyd_10006302 I
COCC4DRAFT_49159 Bipolaris maydis COCC4DRAFT_49159 I
COCCADRAFT_44321 Bipolaris zeicola COCCADRAFT_44321 I
COCMIDRAFT_53102 Bipolaris oryzae COCMIDRAFT_53102 I
COCSADRAFT_107886 Bipolaris sorokiniana COCSADRAFT_107886 I
COCVIDRAFT_49416 Bipolaris victoriae COCVIDRAFT_49416 I
D915_00592 Fasciola hepatica D915_00592 I
D915_04768 Fasciola hepatica D915_04768 I
D915_05481 Fasciola hepatica D915_05481 I
DICVIV_07073 Dictyocaulus viviparus DICVIV_07073 N
DILT_0000254701 Diphyllobothrium latum DILT_0000254701 I
DOTSEDRAFT_78718 Dothistroma septosporum DOTSEDRAFT_78718 I
ECPE_0000388901 Echinostoma caproni ECPE_0000388901 I
ENSAMEG00000001629 Ailuropoda melanoleuca ENSAMEG00000001629 I
ENSAMEG00000016409 Ailuropoda melanoleuca ENSAMEG00000016409 I
ENSAMXG00000000335 Astyanax mexicanus ENSAMXG00000000335 I
ENSAMXG00000012619 Astyanax mexicanus ENSAMXG00000012619 I
ENSAPLG00000000571 Anas platyrhynchos ENSAPLG00000000571 I
ENSAPLG00000010674 Anas platyrhynchos ENSAPLG00000010674 I
ENSAPLG00000014347 Anas platyrhynchos ENSAPLG00000014347 I
ENSBTAP00000001070-D1 Bos grunniens ENSBTAP00000001070-D1 I
ENSBTAP00000016022-D1 Bos grunniens ENSBTAP00000016022-D1 I
ENSCAFG00000010422 Canis familiaris ENSCAFG00000010422 I
ENSCPOG00000008794 Cavia porcellus ENSCPOG00000008794 I
ENSCSAG00000005290 Chlorocebus sabaeus ENSCSAG00000005290 I
ENSCSAG00000011743 Chlorocebus sabaeus ENSCSAG00000011743 I
ENSCSAG00000017349 Chlorocebus sabaeus ENSCSAG00000017349 I
ENSDORG00000003187 Dipodomys ordii ENSDORG00000003187 I
ENSFALG00000005225 Ficedula albicollis ENSFALG00000005225 I
ENSGALG00000013194 Gallus gallus ENSGALG00000013194 I
ENSGGOG00000025373 Gorilla gorilla ENSGGOG00000025373 I
ENSGGOG00000027210 Gorilla gorilla ENSGGOG00000027210 I
ENSGMOG00000006669 Gadus morhua ENSGMOG00000006669 I
ENSLACG00000011795 Latimeria chalumnae ENSLACG00000011795 I
ENSLACG00000012956 Latimeria chalumnae ENSLACG00000012956 I
ENSLOCG00000006946 Lepisosteus oculatus ENSLOCG00000006946 I
ENSLOCG00000008834 Lepisosteus oculatus ENSLOCG00000008834 I
ENSMEUG00000004557 Macropus eugenii ENSMEUG00000004557 I
ENSMEUG00000014864 Macropus eugenii ENSMEUG00000014864 I
ENSMMUP00000001856 Macaca fascicularis ENSMMUP00000001856 I
ENSMPUG00000003361 Mustela putorius furo ENSMPUG00000003361 I
ENSMPUG00000007638 Mustela putorius furo ENSMPUG00000007638 I
ENSNLEG00000001184 Nomascus leucogenys ENSNLEG00000001184 I
ENSOANG00000029378 Ornithorhynchus anatinus ENSOANG00000029378 I
ENSOARG00000016067 Ovis aries ENSOARG00000016067 I
ENSOARG00000017964 Ovis aries ENSOARG00000017964 I
ENSONIG00000007113 Oreochromis niloticus ENSONIG00000007113 I
ENSONIG00000016567 Oreochromis niloticus ENSONIG00000016567 I
ENSONIG00000018672 Oreochromis niloticus ENSONIG00000018672 I
ENSOPRG00000003326 Ochotona princeps ENSOPRG00000003326 I
ENSOPRG00000009909 Ochotona princeps ENSOPRG00000009909 I
ENSP00000305244 Macaca fascicularis ENSP00000305244 I
ENSPANG00000009026 Papio anubis ENSPANG00000009026 I
ENSPANG00000019076 Papio anubis ENSPANG00000019076 I
ENSPFOG00000006638 Poecilia formosa ENSPFOG00000006638 I
ENSPFOG00000013469 Poecilia formosa ENSPFOG00000013469 I
ENSPFOG00000016622 Poecilia formosa ENSPFOG00000016622 I
ENSPPYG00000007354 Pongo abelii ENSPPYG00000007354 I
ENSPPYG00000015327 Pongo abelii ENSPPYG00000015327 I
ENSPSIG00000006981 Pelodiscus sinensis ENSPSIG00000006981 I
ENSPSIG00000016915 Pelodiscus sinensis ENSPSIG00000016915 I
ENSPTRG00000039451 Pan troglodytes ENSPTRG00000039451 I
ENSSHAG00000012619 Sarcophilus harrisii ENSSHAG00000012619 I
ENSSHAG00000013463 Sarcophilus harrisii ENSSHAG00000013463 I
ENSSSCG00000009724 Sus scrofa ENSSSCG00000009724 I
ENSSTOG00000019902 Ictidomys tridecemlineatus ENSSTOG00000019902 I
ENSSTOG00000020840 Ictidomys tridecemlineatus ENSSTOG00000020840 I
ENSTNIG00000000637 Tetraodon nigroviridis ENSTNIG00000000637 I
ENSXMAG00000006967 Xiphophorus maculatus ENSXMAG00000006967 I
ENSXMAG00000012663 Xiphophorus maculatus ENSXMAG00000012663 I
ENSXMAG00000013858 Xiphophorus maculatus ENSXMAG00000013858 I
estExt_fgenesh2_pg.C_2210037 Branchiostoma floridae estExt_fgenesh2_pg.C_2210037 I
estExt_Genewise1.C_110663 Cochliobolus heterostrophus C5 estExt_Genewise1.C_110663 I
FFUJ_12565 Fusarium fujikuroi FFUJ_12565 I
fgenesh1_pg.C_scaffold_7000295 Sporobolomyces roseus fgenesh1_pg.C_scaffold_7000295 N
FGRRES_07914 Fusarium graminearum FGRRES_07914 D
FGRRES_17555 Fusarium graminearum FGRRES_17555 I
FOXG_13545 Fusarium oxysporum FOXG_13545 I
Gfo_R005354 Geospiza fortis Gfo_R005354 I
Gfo_R006175 Geospiza fortis Gfo_R006175 I
Gfo_R014865 Geospiza fortis Gfo_R014865 I
Gfo_R015931 Geospiza fortis Gfo_R015931 I
GPLIN_001377400 Globodera pallida GPLIN_001377400 N
HCOI01137300 Haemonchus contortus HCOI01137300 N
HDID_0000776001 Hymenolepis diminuta HDID_0000776001 I
HelroG138488 Helobdella robusta HelroG138488 I
HelroG153600 Helobdella robusta HelroG153600 I
HelroG171177 Helobdella robusta HelroG171177 I
HelroG84083 Helobdella robusta HelroG84083 N
HMEL002096 Heliconius melpomene HMEL002096 I
HmN_000921700 Hymenolepis microstoma HmN_000921700 I
HmN_000922600 Hymenolepis microstoma HmN_000922600 I
HNAJ_0001179801 Hymenolepis nana HNAJ_0001179801 I
IRX1 Anolis carolinensis ENSACAG00000023038 I
IRX1 Bos taurus ENSBTAG00000000809 I
IRX1 Callithrix jacchus ENSCJAG00000008552 I
IRX1 Cavia porcellus ENSCPOG00000021147 I
IRX1 Equus caballus ENSECAG00000015273 I
IRX1 Echinops telfairi ENSETEG00000004419 I
IRX1 Homo sapiens ENSG00000170549 D
IRX1 Loxodonta africana ENSLAFG00000012017 I
IRX1 Microcebus murinus ENSMICG00000011730 I
IRX1 Macaca mulatta ENSMMUG00000002613 I
IRX1 Monodelphis domestica ENSMODG00000001451 I
Irx1 Mus musculus ENSMUSG00000060969 I
IRX1 Ornithorhynchus anatinus ENSOANG00000001749 I
IRX1 Oryctolagus cuniculus ENSOCUG00000024264 I
IRX1 Otolemur garnettii ENSOGAG00000024732 I
IRX1 Procavia capensis ENSPCAG00000003248 I
IRX1 Pan troglodytes ENSPTRG00000016709 I
Irx1 Rattus norvegicus ENSRNOG00000033609 I
IRX1 Taeniopygia guttata ENSTGUG00000008517 I
IRX1 Tursiops truncatus ENSTTRG00000015625 I
irx1.L Xenopus laevis XB-GENE-865648 I
irx1.S Xenopus laevis XB-GENE-6254076 I
irx1a Danio rerio ENSDARG00000101831 I
irx1a Gasterosteus aculeatus ENSGACG00000006572 I
irx1a Oryzias latipes ENSORLG00000005157 I
irx1a Takifugu rubripes ENSTRUG00000007467 I
IRX3 Bos taurus ENSBTAG00000012083 I
IRX3 Canis familiaris ENSCAFG00000032579 I
IRX3 Callithrix jacchus ENSCJAG00000001418 I
Irx3 Dipodomys ordii ENSDORG00000011798 I
IRX3 Equus caballus ENSECAG00000023496 I
IRX3 Echinops telfairi ENSETEG00000020300 I
IRX3 Homo sapiens ENSG00000177508 D
IRX3 Gorilla gorilla ENSGGOG00000014067 I
IRX3 Loxodonta africana ENSLAFG00000010498 I
IRX3 Microcebus murinus ENSMICG00000016860 I
IRX3 Macaca mulatta ENSMMUG00000001389 I
IRX3 Monodelphis domestica ENSMODG00000013192 I
Irx3 Mus musculus ENSMUSG00000031734 D
IRX3 Otolemur garnettii ENSOGAG00000029236 I
IRX3 Procavia capensis ENSPCAG00000007496 I
IRX3 Pan troglodytes ENSPTRG00000008120 I
IRX3 Pteropus vampyrus ENSPVAG00000015986 I
Irx3 Rattus norvegicus ENSRNOG00000011533 I
IRX3 Sus scrofa ENSSSCG00000002831 I
IRX3 Tupaia belangeri ENSTBEG00000008254 I
irx3 Xenopus tropicalis XB-GENE-480486 I
irx3.L Xenopus laevis XB-GENE-480490 I
irx7 Gasterosteus aculeatus ENSGACG00000011160 I
irx7 Takifugu rubripes ENSTRUG00000007926 I
ISCW017111 Ixodes scapularis ISCW017111 I
L596_g21727 Steinernema carpocapsae L596_g21727 I
L892_g27282 Steinernema scapterisci L892_g27282 I
L893_g31416 Steinernema glaseri L893_g31416 I
L898_g17064 Steinernema monticolum L898_g17064 I
MKX Procavia capensis ENSPCAG00000014719 I
MKX Tupaia belangeri ENSTBEG00000008150 I
mkxb Tetraodon nigroviridis ENSTNIG00000007881 I
mkxb Takifugu rubripes ENSTRUG00000004166 I
Myotis_brandtii_Irx1_10035798 Myotis brandtii Myotis_brandtii_Irx1_10035798 I
NBR_0001052001 Nippostrongylus brasiliensis NBR_0001052001 N
Ocbimv22006483m.g Octopus bimaculoides Ocbimv22006483m.g I
Ogr18478 Ophisaurus gracilis Ogr18478 I
PTT_11733 Pyrenophora teres PTT_11733 I
Pvit_14759 Pogona vitticeps Pvit_14759 I
PXEA_0002454601 Protopolystoma xenopodis PXEA_0002454601 I
SCUD_0000714801 Schistosoma curassoni SCUD_0000714801 I
SETTUDRAFT_162538 Setosphaeria turcica SETTUDRAFT_162538 I
Sjc_0052220 Schistosoma japonicum Sjc_0052220 I
SMAR002833 Strigamia maritima SMAR002833 I
SMAR007687 Strigamia maritima SMAR007687 I
SMRZ_0000148301 Schistosoma margrebowiei SMRZ_0000148301 I
SMTD_0002243001 Schistosoma mattheei SMTD_0002243001 I
SMUV_0000063001 Syphacia muris SMUV_0000063001 I
SNOG_06363 Stagonospora nodorum SNOG_06363 I
SNOG_06363 Phaeosphaeria nodorum SNOG_06363 I
SPER_0001325101 Spirometra erinaceieuropaei SPER_0001325101 I
SSLN_0000846501 Schistocephalus solidus SSLN_0000846501 I
Tal_R006144 Tyto alba Tal_R006144 I
Tal_R007088 Tyto alba Tal_R007088 I
TASK_0000658901 Taenia asiatica TASK_0000658901 I
TsM_000760900 Taenia solium TsM_000760900 I
TTAC_0000670801 Hydatigera taeniaeformis TTAC_0000670801 I
Z519_11142 Cladophialophora bantiana Z519_11142 I