cassava31648.valid.m1 (Manihot esculenta)
WRC

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF08879 (WRC) IPR014977 cassava31648.valid.m1 T351445_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT2G42040
M01088_2.00 		Arabidopsis thaliana
NBTRCACYNN
NNRGTGYAVN		 PBM
Sullivan et al.(2014)
pTH7503 		0.860 0.860
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava31648.valid.m1 WRC 209 251

Links

Other WRC family TFs
Other Manihot esculenta TFs

89 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29613.m000377 Ricinus communis 29613.m000377 I 0.977
29613.m000379 Ricinus communis 29613.m000379 I 1.000
Aquca_014_00855 Aquilegia coerulea Aquca_014_00855 I 0.837
AT2G42040 Arabidopsis thaliana AT2G42040 D 0.860
BGIOSGA005516 Oryza indica BGIOSGA005516 I 0.837
BGIOSGA022518 Oryza indica BGIOSGA022518 I 0.833
Bo3g035920 Brassica oleracea Bo3g035920 I 0.837
Bo4g014690 Brassica oleracea Bo4g014690 I 0.814
Bo4g191280 Brassica oleracea Bo4g191280 I 0.814
Bostr.25993s0574 Boechera stricta Bostr.25993s0574 I 0.837
Bra000251 Brassica rapa Bra000251 I 0.837
Bra004667 Brassica rapa Bra004667 I 0.791
Bra016897 Brassica rapa Bra016897 I 0.814
BRADI1G46270 Brachypodium distachyon BRADI1G46270 I 0.791
Cagra.13389s0020 Capsella grandiflora Cagra.13389s0020 I 0.837
Carubv10023878m.g Capsella rubella Carubv10023878m.g I 0.837
cassava36463.valid.m1 Manihot esculenta cassava36463.valid.m1 I 1.000
cassava36464.valid.m1 Manihot esculenta cassava36464.valid.m1 I 1.000
Ca_07320 Cicer arietinum Ca_07320 I 1.000
Ciclev10012160m.g Citrus clementina Ciclev10012160m.g I 0.977
Cucsa.242590 Cucumis sativus Cucsa.242590 I 0.953
Eucgr.A02456 Eucalyptus grandis Eucgr.A02456 I 1.000
evm.TU.supercontig_85.54 Carica papaya evm.TU.supercontig_85.54 I 1.000
F775_01928 Aegilops tauschii F775_01928 I 0.833
fgenesh2_kg.4__2350__AT2G42040.1 Arabidopsis lyrata fgenesh2_kg.4__2350__AT2G42040.1 I 0.860
gene00456-v1.0-hybrid Fragaria vesca gene00456-v1.0-hybrid I 0.953
GLYMA02G28962 Glycine max GLYMA02G28962 I 0.977
GLYMA03G30170 Glycine max GLYMA03G30170 I 1.000
GLYMA09G16841 Glycine max GLYMA09G16841 I 1.000
GLYMA19G33070 Glycine max GLYMA19G33070 I 1.000
Gorai.002G156300 Gossypium raimondii Gorai.002G156300 I 0.977
Gorai.012G100300 Gossypium raimondii Gorai.012G100300 I 1.000
GRMZM2G033915 Zea mays GRMZM2G033915 I 0.767
GRMZM2G134552 Zea mays GRMZM2G134552 N 0.721
GRMZM2G165991 Zea mays GRMZM2G165991 I 0.756
GSMUA_Achr10G29530_001 Musa acuminata GSMUA_Achr10G29530_001 I 0.977
GSMUA_Achr3G07730_001 Musa acuminata GSMUA_Achr3G07730_001 I 0.953
GSMUA_Achr3G20210_001 Musa acuminata GSMUA_Achr3G20210_001 I 0.930
GSMUA_Achr7G18600_001 Musa acuminata GSMUA_Achr7G18600_001 I 0.977
GSMUA_Achr9G15730_001 Musa acuminata GSMUA_Achr9G15730_001 I 1.000
LjT35F01.80.nd Lotus japonicus LjT35F01.80.nd I 0.953
LPERR02G28190 Leersia perrieri LPERR02G28190 I 0.814
LPERR06G06210 Leersia perrieri LPERR06G06210 I 0.791
MDP0000121493 Malus domestica MDP0000121493 I 0.953
MDP0000154434 Malus domestica MDP0000154434 I 0.977
mgf007626m Mimulus guttatus mgf007626m I 0.791
MLOC_17575 Hordeum vulgare MLOC_17575 I 0.791
MTR_1g054175 Medicago truncatula MTR_1g054175 I 1.000
MTR_7g093350 Medicago truncatula MTR_7g093350 I 1.000
MTR_7g093360 Medicago truncatula MTR_7g093360 I 1.000
OB06G16230 Oryza brachyantha OB06G16230 I 0.814
OBART06G06800 Oryza barthii OBART06G06800 I 0.837
OGLUM02G35430 Oryza glumaepatula OGLUM02G35430 I 0.837
OGLUM06G07170 Oryza glumaepatula OGLUM06G07170 I 0.833
OMERI02G32570 Oryza meridionalis OMERI02G32570 I 0.837
OMERI06G07980 Oryza meridionalis OMERI06G07980 I 0.791
ONIVA02G36360 Oryza nivara ONIVA02G36360 I 0.837
ONIVA06G08110 Oryza nivara ONIVA06G08110 I 0.833
OPUNC02G31650 Oryza punctata OPUNC02G31650 I 0.837
OPUNC06G06450 Oryza punctata OPUNC06G06450 I 0.791
orange1.1g019760m.g Citrus sinensis orange1.1g019760m.g I 0.977
ORGLA02G0296600 Oryza glaberrima ORGLA02G0296600 I 0.837
ORGLA06G0063300 Oryza glaberrima ORGLA06G0063300 I 0.833
ORUFI02G35820 Oryza rufipogon ORUFI02G35820 I 0.837
ORUFI06G07050 Oryza rufipogon ORUFI06G07050 I 0.833
OS02G0773600 Oryza sativa OS02G0773600 I 0.837
OS06G0207600 Oryza sativa OS06G0207600 I 0.833
Pavir.J23833 Panicum virgatum Pavir.J23833 I 0.791
Pavir.J25248 Panicum virgatum Pavir.J25248 I 0.791
PDK_20s1436981g002 Phoenix dactylifera PDK_20s1436981g002 I 0.907
PGSC0003DMG400023669 Solanum tuberosum PGSC0003DMG400023669 I 0.907
PK26699.1 Cannabis sativa PK26699.1 I 0.977
Pm025936 Prunus mume Pm025936 I 1.000
POPTR_0006s20770 Populus trichocarpa POPTR_0006s20770 I 0.953
POPTR_0006s20790 Populus trichocarpa POPTR_0006s20790 I 0.977
POPTR_0016s05840 Populus trichocarpa POPTR_0016s05840 I 0.977
POPTR_0016s05850 Populus trichocarpa POPTR_0016s05850 I 0.953
PRUPE_ppa016277mg Prunus persica PRUPE_ppa016277mg I 1.000
SapurV1A.0251s0220 Salix purpurea SapurV1A.0251s0220 I 0.930
SapurV1A.0251s0230 Salix purpurea SapurV1A.0251s0230 I 0.953
SapurV1A.0854s0090 Salix purpurea SapurV1A.0854s0090 I 0.977
SapurV1A.0854s0100 Salix purpurea SapurV1A.0854s0100 I 0.930
SapurV1A.3188s0010 Salix purpurea SapurV1A.3188s0010 I 0.930
Sb10g006810 Sorghum bicolor Sb10g006810 I 0.791
Solyc10g080530.1 Solanum lycopersicum Solyc10g080530.1 I 0.907
TCM_024932 Theobroma cacao TCM_024932 I 1.000
Thhalv10017052m.g Eutrema salsugineum Thhalv10017052m.g I 0.860
VIT_08s0007g06640 Vitis vinifera VIT_08s0007g06640 I 0.977
VIT_08s0007g06690 Vitis vinifera VIT_08s0007g06690 I 0.907