CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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VDBG_01253
(
Verticillium albo atrum
)
Zinc cluster
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00172 (Zn_clus)
IPR001138
VDBG_01253
T357941_2.00
Broad (2016-May-1)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
NCU05308
M02610_2.00
Neurospora crassa
CGGRNATA
TATNYCCG
PBM
Weirauch et al.(2014)
pTH9681
0.585
0.806
For this family, TFs with SR scores >
0.537
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
VDBG_01253T0
Zinc cluster
90
125
LSCRECVDRKTKCDRGRPHCLACIKRQTECKYDAVA
Links
Other
Zinc cluster
family TFs
Other
Verticillium albo atrum
TFs
48 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
AB05588.1
Alternaria brassicicola
AB05588.1
N
0.557
ACRE_065310
Acremonium chrysogenum
ACRE_065310
I
0.594
BBA_06902
Beauveria bassiana
BBA_06902
I
0.585
Bcin07g03570
Botrytis cinerea
Bcin07g03570
N
0.557
CFIO01_09529
Colletotrichum fioriniae
CFIO01_09529
I
0.577
CH063_07756
Colletotrichum higginsianum
CH063_07756
I
0.609
Cob_02853
Colletotrichum orbiculare
Cob_02853
I
0.585
COCSADRAFT_146273
Bipolaris sorokiniana
COCSADRAFT_146273
I
0.565
CPUR_05349
Claviceps purpurea
CPUR_05349
I
0.585
CSUB01_05661
Colletotrichum sublineola
CSUB01_05661
I
0.609
estExt_fgenesh2_pg.C_120136
Neurospora discreta
estExt_fgenesh2_pg.C_120136
I
0.585
estExt_Genewise1.C_32477
Cryphonectria parasitica
estExt_Genewise1.C_32477
I
0.587
e_gw1.82.71.1
Nectria haematococca
e_gw1.82.71.1
I
0.585
F503_04451
Ophiostoma piceae uamh
F503_04451
I
0.585
FFUJ_04549
Fusarium fujikuroi
FFUJ_04549
I
0.585
FOXG_06378
Fusarium oxysporum
FOXG_06378
I
0.585
FPSE_07181
Fusarium pseudograminearum
FPSE_07181
I
0.585
FVEG_04228
Fusarium verticillioides
FVEG_04228
I
0.585
GGTG_04125
Gaeumannomyces graminis
GGTG_04125
I
0.548
GLRG_07219
Colletotrichum graminicola
GLRG_07219
I
0.609
GMDG_01402
Pseudogymnoascus destructans
GMDG_01402
I
0.570
GYMLUDRAFT_98786
Gymnopus luxurians
GYMLUDRAFT_98786
I
0.538
LEMA_P116160.1
Leptosphaeria maculans
LEMA_P116160.1
N
0.557
M437DRAFT_58098
Aureobasidium melanogenum
M437DRAFT_58098
N
0.557
M438DRAFT_343903
Aureobasidium pullulans
M438DRAFT_343903
N
0.557
MAJ_02866
Metarhizium majus
MAJ_02866
I
0.585
MBR_01984
Metarhizium brunneum
MBR_01984
I
0.585
MGU_02665
Metarhizium guizhouense
MGU_02665
I
0.585
NCU05308
Neurospora crassa
NCU05308
D
0.585
NechaG49895
Fusarium solani
NechaG49895
I
0.585
OIDMADRAFT_108168
Oidiodendron maius
OIDMADRAFT_108168
I
0.585
PFICI_05140
Pestalotiopsis fici
PFICI_05140
I
0.577
PODANS_3_4010
Podospora anserina
PODANS_3_4010
I
0.556
S40285_08437
Stachybotrys chlorohalonata
S40285_08437
I
0.578
S40288_04589
Stachybotrys chartarum
S40288_04589
I
0.578
SBOR_0518
Sclerotinia borealis
SBOR_0518
I
0.571
SEPMUDRAFT_161432
Sphaerulina musiva
SEPMUDRAFT_161432
I
0.574
SMAC_01681
Sordaria macrospora
SMAC_01681
I
0.585
SNOG_13376
Stagonospora nodorum
SNOG_13376
I
0.565
SS1G_01905
Sclerotinia sclerotiorum
SS1G_01905
I
0.565
TRIATDRAFT_294558
Trichoderma atroviride
TRIATDRAFT_294558
I
0.585
TRIVIDRAFT_213406
Trichoderma virens
TRIVIDRAFT_213406
I
0.585
UCRNP2_9108
Neofusicoccum parvum
UCRNP2_9108
N
0.547
V499_08858
Pseudogymnoascus pannorum
V499_08858
I
0.570
VDAG_08009
Verticillium dahliae
VDAG_08009
I
0.683
VDBG_01253
Verticillium alfalfae
VDBG_01253
I
0.683
VHEMI00550
Torrubiella hemipterigena
VHEMI00550
I
0.585
X797_005973
Metarhizium robertsii
X797_005973
I
0.585