LACBIDRAFT_254568 (Laccaria bicolor)
Zinc cluster

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00172 (Zn_clus) IPR001138 LACBIDRAFT_254568 T372071_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
aod-2
M02599_2.00 		Neurospora crassa
NNNNCGGRN
NYCCGNNNN		 PBM
Weirauch et al.(2014)
pTH8944 		0.571 0.784
SCHCODRAFT_110010
M01418_2.00 		Schizophyllum commune
NWYCGGAABN
NVTTCCGRWN		 PBM
Lambert et al.(2019)
pTH9839 		0.540 0.865
For this family, TFs with SR scores > 0.537 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EDR01527 Zinc cluster 9 47

Links

Other Zinc cluster family TFs
Other Laccaria bicolor TFs

42 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
estExt_fgenesh1_kg.C_3051400005 Phytophthora capsici estExt_fgenesh1_kg.C_3051400005 I
estExt_Genewise1Plus.C_180162 Phytophthora capsici estExt_Genewise1Plus.C_180162 I
estExt_Genewise1Plus.C_2050016 Phytophthora capsici estExt_Genewise1Plus.C_2050016 I
F443_08983 Phytophthora parasitica F443_08983 I
F443_19686 Phytophthora parasitica F443_19686 I
F443_20671 Phytophthora parasitica F443_20671 I
F443_20702 Phytophthora parasitica F443_20702 I
F443_20703 Phytophthora parasitica F443_20703 I
fgenesh1_kg.C_scaffold_15000102 Phytophthora capsici fgenesh1_kg.C_scaffold_15000102 I
fgenesh_scip_prom.28083.1909 Phytophthora lateralis fgenesh_scip_prom.28083.1909 I
fgenesh_scip_prom.28083.5526 Phytophthora lateralis fgenesh_scip_prom.28083.5526 I
fgenesh_scip_prom.46568.8840 Phytophthora kernoviae fgenesh_scip_prom.46568.8840 I
HpaG810857 Hyaloperonospora arabidopsidis HpaG810857 I
maker-pag1_scaffold_151-fgenesh-gene-0.1 Pythium aphanidermatum maker-pag1_scaffold_151-fgenesh-gene-0.1 I
maker-pag1_scaffold_266-snap-gene-0.11 Pythium aphanidermatum maker-pag1_scaffold_266-snap-gene-0.11 I
maker-par_contig_1566-fgenesh-gene-0.0 Pythium arrhenomanes maker-par_contig_1566-fgenesh-gene-0.0 I
maker-par_contig_1627-fgenesh-gene-0.1 Pythium arrhenomanes maker-par_contig_1627-fgenesh-gene-0.1 I
maker-par_contig_1627-snap-gene-0.2 Pythium arrhenomanes maker-par_contig_1627-snap-gene-0.2 I
maker-par_contig_2748-snap-gene-0.2 Pythium arrhenomanes maker-par_contig_2748-snap-gene-0.2 I
maker-pir_contig_435-fgenesh-gene-0.6 Pythium irregulare maker-pir_contig_435-fgenesh-gene-0.6 I
maker-pir_contig_435-fgenesh-gene-0.7 Pythium irregulare maker-pir_contig_435-fgenesh-gene-0.7 I
maker-pir_contig_516-fgenesh-gene-0.2 Pythium irregulare maker-pir_contig_516-fgenesh-gene-0.2 I
maker-pir_contig_548-fgenesh-gene-0.3 Pythium irregulare maker-pir_contig_548-fgenesh-gene-0.3 I
maker-pir_contig_548-fgenesh-gene-0.4 Pythium irregulare maker-pir_contig_548-fgenesh-gene-0.4 I
maker-pir_contig_548-snap-gene-0.6 Pythium irregulare maker-pir_contig_548-snap-gene-0.6 I
maker-piw_contig_50-fgenesh-gene-0.1 Pythium iwayamai maker-piw_contig_50-fgenesh-gene-0.1 I
maker-piw_contig_637-fgenesh-gene-0.5 Pythium iwayamai maker-piw_contig_637-fgenesh-gene-0.5 I
maker-pve_contig_1017-fgenesh-gene-0.2 Pythium vexans maker-pve_contig_1017-fgenesh-gene-0.2 I
maker-pve_contig_13-snap-gene-0.46 Pythium vexans maker-pve_contig_13-snap-gene-0.46 I
maker-pve_contig_734-snap-gene-0.9 Pythium vexans maker-pve_contig_734-snap-gene-0.9 I
Phyra80938 Phytophthora ramorum Phyra80938 D
Phyra87784 Phytophthora ramorum Phyra87784 I
Phyra95260 Phytophthora ramorum Phyra95260 I
Physo132941 Phytophthora sojae Physo132941 I
Physo132943 Phytophthora sojae Physo132943 I
Physo132945 Phytophthora sojae Physo132945 I
Physo132946 Phytophthora sojae Physo132946 I
PITG_14400 Phytophthora infestans PITG_14400 I
PITG_18789 Phytophthora infestans PITG_18789 I
PK06453.1 Cannabis sativa PK06453.1 I
PYU1_G002833 Pythium ultimum PYU1_G002833 I
PYU1_G002835 Pythium ultimum PYU1_G002835 I
PYU1_G002849 Pythium ultimum PYU1_G002849 I