13626_YKL038W (Saccharomyces paradoxus)
Zinc cluster

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00172 (Zn_clus) IPR001138 13626_YKL038W T390756_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RGT1
M00092_2.00 		Saccharomyces cerevisiae
CGGRDNWWHN
NDWWNHYCCG		 PBM
Badis et al.(2008)
RGT1_2131 		0.683 0.950
RGT1
M01585_2.00 		Saccharomyces cerevisiae
HCGGADNWWN
NWWNHTCCGD		 PBM
Zhu et al.(2009)
Rgt1 		0.683 0.950
RGT1
M07518_2.00 		Saccharomyces cerevisiae
NCGGADNAWHN
NDWTNHTCCGN		 PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0367.1 		0.683 0.950
RGT1
M08673_2.00 		Saccharomyces cerevisiae
NDNNNYCGGAWWAAYHNNNN
NNNNDRTTWWTCCGRNNNHN		 Misc
DeBoer et al.(2011)
YKL038W_803 		0.683 0.950
RGT1
M11480_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$RGT1_Q5 		0.683 0.950
For this family, TFs with SR scores > 0.537 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
13626_YKL038W Zinc cluster 45 86

Links

Other Zinc cluster family TFs
Other Saccharomyces paradoxus TFs

23 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
13522_YKL038W Saccharomyces mikatae 13522_YKL038W I 0.666
14629_YKL038W Saccharomyces bayanus 14629_YKL038W I 0.675
AACERI_AaceriAGL083W Saccharomycetaceae sp ashbya aceri AACERI_AaceriAGL083W I 0.595
AGOS_AGL083W Ashbya gossypii AGOS_AGL083W I 0.595
CAGL0L01903g Candida glabrata CAGL0L01903g I 0.600
DRE_01419 Drechslerella stenobrocha DRE_01419 I 0.544
Ecym_7239 Eremothecium cymbalariae Ecym_7239 I 0.549
KAFR_0B01450 Kazachstania africana KAFR_0B01450 I 0.557
KLTH0D07260g Lachancea thermotolerans KLTH0D07260g I 0.543
KLTH0D07260g Kluyveromyces thermotolerans KLTH0D07260g I 0.543
KNAG_0A07100 Kazachstania naganishii KNAG_0A07100 I 0.658
Kpol_1002p5 Vanderwaltozyma polyspora Kpol_1002p5 I 0.659
NCAS_0A04750 Naumovozyma castellii NCAS_0A04750 I 0.587
NDAI_0K01800 Naumovozyma dairenensis NDAI_0K01800 I 0.588
RGT1 Saccharomyces cerevisiae YKL038W D 0.683
SAKL0A09856g Lachancea kluyveri SAKL0A09856g I 0.583
Scas_Contig625.5 Saccharomyces castellii Scas_Contig625.5 I 0.587
SU7_2014 Saccharomyces arboricola SU7_2014 I 0.682
TDEL_0B06360 Torulaspora delbrueckii TDEL_0B06360 I 0.559
TPHA_0C04280 Tetrapisispora phaffii TPHA_0C04280 I 0.586
ZBAI_03469 Zygosaccharomyces bailii ZBAI_03469 I 0.592
ZBAI_08469 Zygosaccharomyces bailii ZBAI_08469 I 0.592
ZYRO0E05676g Zygosaccharomyces rouxii ZYRO0E05676g I 0.592