4533_YDR213W (Saccharomyces paradoxus)
Zinc cluster

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00172 (Zn_clus) IPR001138 4533_YDR213W T390854_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
UPC2
M00920_2.00 		Saccharomyces cerevisiae
NTCGTWYVN
NBRWACGAN		 PBM
Gordan et al.(2011)
Upc2 		0.683 0.974
UPC2
M07508_2.00 		Saccharomyces cerevisiae
NRWACGA
TCGTWYN		 PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0411.1 		0.683 0.974
UPC2
M08654_2.00 		Saccharomyces cerevisiae
NRWACGA
TCGTWYN		 Misc
DeBoer et al.(2011)
YDR213W_544 		0.683 0.974
ECM22
M00096_2.00 		Saccharomyces cerevisiae
NNCSGRDNHN
NDNHYCSGNN		 PBM
Badis et al.(2008)
ECM22_2066 		0.541 0.692
ECM22
M00924_2.00 		Saccharomyces cerevisiae
NNDWACGRN
NYCGTWHNN		 PBM
Gordan et al.(2011)
Ecm22 		0.541 0.692
ECM22
M01589_2.00 		Saccharomyces cerevisiae
NNNCGGVN
NBCCGNNN		 PBM
Zhu et al.(2009)
Ecm22 		0.541 0.692
ECM22
M07522_2.00 		Saccharomyces cerevisiae
TCCGGAD
HTCCGGA		 PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0292.1 		0.541 0.692
ECM22
M08679_2.00 		Saccharomyces cerevisiae
NNYCGGRNNDMCGGAVNH
DNBTCCGKHNNYCCGRNN		 Misc
DeBoer et al.(2011)
YLR228C_849 		0.541 0.692
For this family, TFs with SR scores > 0.537 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
4533_YDR213W Zinc cluster 49 88

Links

Other Zinc cluster family TFs
Other Saccharomyces paradoxus TFs

22 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
15982_YLR228C Saccharomyces paradoxus 15982_YLR228C I 0.541
17002_YLR228C Saccharomyces bayanus 17002_YLR228C I 0.571
23482_Multiple Saccharomyces mikatae 23482_Multiple I 0.541
4123_Multiple Saccharomyces mikatae 4123_Multiple I 0.667
4515_Multiple Saccharomyces bayanus 4515_Multiple I 0.667
AACERI_AaceriAGL091W Saccharomycetaceae sp ashbya aceri AACERI_AaceriAGL091W I 0.549
AGOS_AGL091W Ashbya gossypii AGOS_AGL091W I 0.549
ECM22 Saccharomyces cerevisiae YLR228C D 0.541
Ecym_4144 Eremothecium cymbalariae Ecym_4144 I 0.547
EURHEDRAFT_400952 Aspergillus ruber EURHEDRAFT_400952 I 0.558
KLTH0F07854g Lachancea thermotolerans KLTH0F07854g I 0.544
KLTH0F07854g Kluyveromyces thermotolerans KLTH0F07854g I 0.544
KNAG_0A02550 Kazachstania naganishii KNAG_0A02550 I 0.596
Kwal_3122 Kluyveromyces waltii Kwal_3122 I 0.544
NCAS_0C02730 Naumovozyma castellii NCAS_0C02730 I 0.594
NDAI_0C04840 Naumovozyma dairenensis NDAI_0C04840 I 0.539
NDAI_0E03460 Naumovozyma dairenensis NDAI_0E03460 I 0.564
SAKL0H13024g Lachancea kluyveri SAKL0H13024g I 0.596
Scas_Contig679.26 Saccharomyces castellii Scas_Contig679.26 I 0.594
SU7_2615 Saccharomyces arboricola SU7_2615 I 0.667
UPC2 Saccharomyces cerevisiae YDR213W D 0.683
ZBAI_09613 Zygosaccharomyces bailii ZBAI_09613 I 0.549