60638.m00016 (Ricinus communis)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 60638.m00016 T006783_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
DREB1F
M00962_2.00 		Arabidopsis thaliana
NRCCGACNN
NNGTCGGYN		 PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_thaliana 		0.753 0.780
DREB1F
M00840_2.00 		Arabidopsis thaliana
NRYCGACNN
NNGTCGRYN		 PBM
Franco-Zorrilla et al.(2014)
DDF1 		0.753 0.780
DDF1
M00964_2.00 		Arabidopsis lyrata
NRYCGACDY
RHGTCGRYN		 PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_lyrata 		0.753 0.780
DREB1F
M06564_2.00 		Arabidopsis thaliana
NHNHYGYCGACATNN
NNATGTCGRCRDNDN		 Dap-seq
OMalley et al.(2016)
DDF1_col_a 		0.753 0.780
DREB1F
M06565_2.00 		Arabidopsis thaliana
HNDNNRYCGACAH
DTGTCGRYNNHND		 Dap-seq
OMalley et al.(2016)
DDF1_colamp_a 		0.753 0.780
DREB1F
M09701_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1F_03 		0.753 0.780
DREB1D
M06678_2.00 		Arabidopsis thaliana
NHBRCCGACRTNN
NNAYGTCGGYVDN		 Dap-seq
OMalley et al.(2016)
CBF4_col_a 		0.734 0.860
DREB1D
M06679_2.00 		Arabidopsis thaliana
HYRCCGACATND
HNATGTCGGYRD		 Dap-seq
OMalley et al.(2016)
CBF4_colamp_a 		0.734 0.860
DREB1A
M01624_2.00 		Arabidopsis thaliana
NRCCGACNNN
NNNGTCGGYN		 PBM
Weirauch et al.(2014)
pTH8163 		0.731 0.840
DREB1A
M01625_2.00 		Arabidopsis thaliana
NNRCCGACNW
WNGTCGGYNN		 PBM
Weirauch et al.(2014)
pTH9718 		0.731 0.840
DREB1A
M06641_2.00 		Arabidopsis thaliana
HNYBRCCGACDWNN
NNWHGTCGGYVRND		 Dap-seq
OMalley et al.(2016)
CBF3_col_a 		0.731 0.840
DREB1A
M06642_2.00 		Arabidopsis thaliana
YBRCCGACATN
NATGTCGGYVR		 Dap-seq
OMalley et al.(2016)
CBF3_colamp_a 		0.731 0.840
ddf2
M00965_2.00 		Arabidopsis lyrata
NRYCGACAT
ATGTCGRYN		 PBM
LehtiShiu et al.(2015)
DDF2_Arabidopsis_lyrata 		0.726 0.780
DREB1G
M01635_2.00 		Oryza sativa
NYGCCGACAN
NTGTCGGCRN		 PBM
Weirauch et al.(2014)
pTH8352 		0.699 0.740
DREB1G
M09707_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1G_01 		0.699 0.740
DREB1C
M01623_2.00 		Arabidopsis thaliana
RCCGACAT
ATGTCGGY		 PBM
Weirauch et al.(2014)
pTH8187 		0.696 0.780
DREB1C
M06639_2.00 		Arabidopsis thaliana
NNNHBRCCGACATNN
NNATGTCGGYVDNNN		 Dap-seq
OMalley et al.(2016)
CBF2_col_a 		0.696 0.780
DREB1C
M06640_2.00 		Arabidopsis thaliana
NYBRCCGACATVN
NBATGTCGGYVRN		 Dap-seq
OMalley et al.(2016)
CBF2_colamp_a 		0.696 0.780
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
60638.m00016 AP2 46 97

Links

Other AP2 family TFs
Other Ricinus communis TFs

166 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_19529 Aegilops tauschii F775_19529 N
F775_31854 Aegilops tauschii F775_31854 N
BRADI2G60970 Brachypodium distachyon BRADI2G60970 N
BRADI2G61050 Brachypodium distachyon BRADI2G61050 N
BRADI3G43250 Brachypodium distachyon BRADI3G43250 N
MLOC_36351 Hordeum vulgare MLOC_36351 N
MLOC_67053 Hordeum vulgare MLOC_67053 N
MLOC_72280 Hordeum vulgare MLOC_72280 N
LPERR01G38470 Leersia perrieri LPERR01G38470 N
OBART01G44150 Oryza barthii OBART01G44150 N
OB01G53300 Oryza brachyantha OB01G53300 N
ORGLA01G0380200 Oryza glaberrima ORGLA01G0380200 N
OGLUM01G48440 Oryza glumaepatula OGLUM01G48440 N
BGIOSGA000097 Oryza indica BGIOSGA000097 N
BGIOSGA005178 Oryza indica BGIOSGA005178 N
OLONG_006457 Oryza longistaminata OLONG_006457 N
OMERI01G40940 Oryza meridionalis OMERI01G40940 N
OPUNC01G43070 Oryza punctata OPUNC01G43070 N
ORUFI01G47560 Oryza rufipogon ORUFI01G47560 N
OS01G0952800 Oryza sativa OS01G0952800 N
Pavir.J04771 Panicum virgatum Pavir.J04771 N
Pavir.Ea04053 Panicum virgatum Pavir.Ea04053 N
Si002720m.g Setaria italica Si002720m.g N
Sb03g046090 Sorghum bicolor Sb03g046090 N
Traes_2AL_ACBAA6A31 Triticum aestivum Traes_2AL_ACBAA6A31 N
Traes_2BL_00608F8D6 Triticum aestivum Traes_2BL_00608F8D6 N
Traes_2DL_865346DA2 Triticum aestivum Traes_2DL_865346DA2 N
Traes_3AL_95403ABBA Triticum aestivum Traes_3AL_95403ABBA N
TRAES3BF136000020CFD_g Triticum aestivum TRAES3BF136000020CFD_g N
TRIUR3_18175 Triticum urartu TRIUR3_18175 N
TRIUR3_22165 Triticum urartu TRIUR3_22165 N
GRMZM2G057413 Zea mays GRMZM2G057413 N
AC193786.3_FG005 Zea mays AC193786.3_FG005 N