Cagra.1504s0045 (Capsella grandiflora)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Cagra.1504s0045 T007734_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
DREB2A
M06655_2.00 		Arabidopsis thaliana
NNNNHDHMACCGMCWYHNNNN
NNNNDRWGKCGGTKDHDNNNN		 Dap-seq
OMalley et al.(2016)
DREB2_col_a 		0.788 0.980
DREB2A
M06656_2.00 		Arabidopsis thaliana
NHNHMACCGMCWTWD
HWAWGKCGGTKDNDN		 Dap-seq
OMalley et al.(2016)
DREB2_colamp_a 		0.788 0.980
PK07402.1
M01097_2.00 		Cannabis sativa
NVRCCGMCH
DGKCGGYBN		 PBM
Lambert et al.(2019)
pTH11436 		0.685 0.857
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.1504s0045.1.p AP2 77 128

Links

Other AP2 family TFs
Other Capsella grandiflora TFs

42 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_42450 Aegilops tauschii F775_42450 I
F775_01070 Aegilops tauschii F775_01070 I
AMTR_s00022p00165560 Amborella trichopoda AMTR_s00022p00165560 I
GIS2 Arabidopsis lyrata fgenesh2_kg.6__609__AT5G06650.1 I
ZFP5 Arabidopsis thaliana AT1G10480 D
GIS2 Arabidopsis thaliana AT5G06650 I
Bostr.2902s0137 Boechera stricta Bostr.2902s0137 I
Bostr.13671s0437 Boechera stricta Bostr.13671s0437 I
Bostr.13129s0308 Boechera stricta Bostr.13129s0308 I
BRADI4G30920 Brachypodium distachyon BRADI4G30920 I
BRADI4G37760 Brachypodium distachyon BRADI4G37760 I
Bo9g011450 Brassica oleracea Bo9g011450 I
Bo2g007320 Brassica oleracea Bo2g007320 I
Bo9g166240 Brassica oleracea Bo9g166240 I
Bo8g109510 Brassica oleracea Bo8g109510 I
Bra028724 Brassica rapa Bra028724 I
Bra008787 Brassica rapa Bra008787 I
PK10012.1 Cannabis sativa PK10012.1 I
Cagra.1504s0017 Capsella grandiflora Cagra.1504s0017 I
Cagra.3166s0007 Capsella grandiflora Cagra.3166s0007 I
Carubv10002570m.g Capsella rubella Carubv10002570m.g I
Carubv10003685m.g Capsella rubella Carubv10003685m.g I
Carubv10003820m.g Capsella rubella Carubv10003820m.g I
Carubv10018785m.g Capsella rubella Carubv10018785m.g I
evm.TU.supercontig_116.88 Carica papaya evm.TU.supercontig_116.88 I
evm.TU.supercontig_1307.1 Carica papaya evm.TU.supercontig_1307.1 I
evm.TU.supercontig_51.84 Carica papaya evm.TU.supercontig_51.84 I
Ca_08116 Cicer arietinum Ca_08116 I
Ciclev10003844m.g Citrus clementina Ciclev10003844m.g I
orange1.1g046965m.g Citrus sinensis orange1.1g046965m.g I
Thhalv10008773m.g Eutrema salsugineum Thhalv10008773m.g I
Thhalv10015891m.g Eutrema salsugineum Thhalv10015891m.g I
gene05169-v1.0-hybrid Fragaria vesca gene05169-v1.0-hybrid I
gene05263-v1.0-hybrid Fragaria vesca gene05263-v1.0-hybrid I
GLYMA19G40220 Glycine max GLYMA19G40220 I
GLYMA06G14783 Glycine max GLYMA06G14783 I
GLYMA03G37610 Glycine max GLYMA03G37610 I
MLOC_4507 Hordeum vulgare MLOC_4507 I
LPERR09G07930 Leersia perrieri LPERR09G07930 I
LPERR08G07840 Leersia perrieri LPERR08G07840 I
Lus10017229.g Linum usitatissimum Lus10017229.g I
chr5.LjT04G07.90.nd Lotus japonicus chr5.LjT04G07.90.nd I
MDP0000165710 Malus domestica MDP0000165710 I
MDP0000121370 Malus domestica MDP0000121370 I
cassava45710.m1 Manihot esculenta cassava45710.m1 I
cassava44297.m1 Manihot esculenta cassava44297.m1 I
OBART09G11250 Oryza barthii OBART09G11250 I
OB09G17800 Oryza brachyantha OB09G17800 I
ORGLA09G0084000 Oryza glaberrima ORGLA09G0084000 I
OGLUM09G11630 Oryza glumaepatula OGLUM09G11630 I
BGIOSGA029710 Oryza indica BGIOSGA029710 I
OLONG_006424 Oryza longistaminata OLONG_006424 I
OMERI09G08780 Oryza meridionalis OMERI09G08780 I
ONIVA09G10990 Oryza nivara ONIVA09G10990 I
OPUNC09G09720 Oryza punctata OPUNC09G09720 I
ORUFI09G12050 Oryza rufipogon ORUFI09G12050 I
OS09G0431900 Oryza sativa OS09G0431900 I
Pavir.Bb02239 Panicum virgatum Pavir.Bb02239 I
Pavir.Ha01090 Panicum virgatum Pavir.Ha01090 I
Pavir.Ia03096 Panicum virgatum Pavir.Ia03096 I
Pavir.J36164 Panicum virgatum Pavir.J36164 I
Pavir.Ia03263 Panicum virgatum Pavir.Ia03263 I
Pavir.Ib01877 Panicum virgatum Pavir.Ib01877 I
Pavir.Ib01803 Panicum virgatum Pavir.Ib01803 I
Pavir.Ib01788 Panicum virgatum Pavir.Ib01788 I
Pm008291 Prunus mume Pm008291 I
30045.m000471 Ricinus communis 30045.m000471 I
SELMODRAFT_405785 Selaginella moellendorffii SELMODRAFT_405785 I
SELMODRAFT_450839 Selaginella moellendorffii SELMODRAFT_450839 I
SELMODRAFT_450813 Selaginella moellendorffii SELMODRAFT_450813 I
SELMODRAFT_450832 Selaginella moellendorffii SELMODRAFT_450832 I
Si028367m.g Setaria italica Si028367m.g I
Si031489m.g Setaria italica Si031489m.g I
Si037914m.g Setaria italica Si037914m.g I
Solyc10g078970.1 Solanum lycopersicum Solyc10g078970.1 I
Solyc10g078990.1 Solanum lycopersicum Solyc10g078990.1 I
PGSC0003DMG400011450 Solanum tuberosum PGSC0003DMG400011450 I
Sb02g025390 Sorghum bicolor Sb02g025390 I
Sb01g034110 Sorghum bicolor Sb01g034110 I
TCM_044725 Theobroma cacao TCM_044725 I
Traes_5AL_81EFE5211 Triticum aestivum Traes_5AL_81EFE5211 I
Traes_5BL_3E6B0CD61 Triticum aestivum Traes_5BL_3E6B0CD61 I
Traes_5DL_B97546DA11 Triticum aestivum Traes_5DL_B97546DA11 I
Traes_5DL_DD8A0F6BE Triticum aestivum Traes_5DL_DD8A0F6BE I
TRIUR3_22340 Triticum urartu TRIUR3_22340 I
TRIUR3_34498 Triticum urartu TRIUR3_34498 I
VIT_08s0040g00750 Vitis vinifera VIT_08s0040g00750 I
GRMZM2G403590 Zea mays GRMZM2G403590 I
GRMZM2G703281 Zea mays GRMZM2G703281 I
GRMZM2G161255 Zea mays GRMZM2G161255 I
GRMZM2G108818 Zea mays GRMZM2G108818 I
GRMZM2G037574 Zea mays GRMZM2G037574 I