Carubv10003685m.g (Capsella rubella)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Carubv10003685m.g T142699_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ZFP5
M01851_2.00 		Arabidopsis thaliana
DSWTNNNN
NNNNAWSH		 PBM
Weirauch et al.(2014)
pTH7539 		0.766 0.696
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10003685m C2H2 ZF 27 49

Links

Other C2H2 ZF family TFs
Other Capsella rubella TFs

97 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cagra.1504s0017 Capsella grandiflora Cagra.1504s0017 I 0.824
GIS2 Arabidopsis thaliana AT5G06650 I 0.812
Bra028724 Brassica rapa Bra028724 I 0.812
GIS2 Arabidopsis lyrata fgenesh2_kg.6__609__AT5G06650.1 I 0.812
LPERR08G07840 Leersia perrieri LPERR08G07840 I 0.812
Bostr.13129s0308 Boechera stricta Bostr.13129s0308 I 0.812
Carubv10003820m.g Capsella rubella Carubv10003820m.g I 0.812
VIT_08s0040g00750 Vitis vinifera VIT_08s0040g00750 I 0.776
30045.m000471 Ricinus communis 30045.m000471 I 0.776
cassava44297.m1 Manihot esculenta cassava44297.m1 I 0.776
evm.TU.supercontig_51.84 Carica papaya evm.TU.supercontig_51.84 I 0.776
F775_09467 Aegilops tauschii F775_09467 N 0.771
Eucgr.B02393 Eucalyptus grandis Eucgr.B02393 N 0.771
Bostr.13129s0453 Boechera stricta Bostr.13129s0453 N 0.768
ZFP5 Arabidopsis thaliana AT1G10480 D 0.766
BGIOSGA029710 Oryza indica BGIOSGA029710 I 0.766
Bo8g109510 Brassica oleracea Bo8g109510 I 0.766
BRADI4G30920 Brachypodium distachyon BRADI4G30920 I 0.766
F775_01070 Aegilops tauschii F775_01070 I 0.766
GRMZM2G037574 Zea mays GRMZM2G037574 I 0.766
GRMZM2G108818 Zea mays GRMZM2G108818 I 0.766
LPERR09G07930 Leersia perrieri LPERR09G07930 I 0.766
MLOC_4507 Hordeum vulgare MLOC_4507 I 0.766
OB09G17800 Oryza brachyantha OB09G17800 I 0.766
OBART09G11250 Oryza barthii OBART09G11250 I 0.766
OGLUM09G11630 Oryza glumaepatula OGLUM09G11630 I 0.766
OLONG_006424 Oryza longistaminata OLONG_006424 I 0.766
OMERI09G08780 Oryza meridionalis OMERI09G08780 I 0.766
ONIVA09G10990 Oryza nivara ONIVA09G10990 I 0.766
OPUNC09G09720 Oryza punctata OPUNC09G09720 I 0.766
ORGLA09G0084000 Oryza glaberrima ORGLA09G0084000 I 0.766
ORUFI09G12050 Oryza rufipogon ORUFI09G12050 I 0.766
OS09G0431900 Oryza sativa OS09G0431900 I 0.766
Sb02g025390 Sorghum bicolor Sb02g025390 I 0.766
Si028367m.g Setaria italica Si028367m.g I 0.766
Si031489m.g Setaria italica Si031489m.g I 0.766
Traes_5AL_81EFE5211 Triticum aestivum Traes_5AL_81EFE5211 I 0.766
Traes_5BL_3E6B0CD61 Triticum aestivum Traes_5BL_3E6B0CD61 I 0.766
Traes_5DL_B97546DA11 Triticum aestivum Traes_5DL_B97546DA11 I 0.766
TRIUR3_22340 Triticum urartu TRIUR3_22340 I 0.766
Ca_08116 Cicer arietinum Ca_08116 I 0.766
Bostr.13671s0437 Boechera stricta Bostr.13671s0437 I 0.766
Pavir.Bb02239 Panicum virgatum Pavir.Bb02239 I 0.766
Pavir.Ha01090 Panicum virgatum Pavir.Ha01090 I 0.766
Pavir.J36164 Panicum virgatum Pavir.J36164 I 0.766
Thhalv10008773m.g Eutrema salsugineum Thhalv10008773m.g I 0.766
AMTR_s00022p00165560 Amborella trichopoda AMTR_s00022p00165560 I 0.764
Bo2g007320 Brassica oleracea Bo2g007320 I 0.764
Bo9g011450 Brassica oleracea Bo9g011450 I 0.764
Bo9g166240 Brassica oleracea Bo9g166240 I 0.764
Bra008787 Brassica rapa Bra008787 I 0.764
BRADI4G37760 Brachypodium distachyon BRADI4G37760 I 0.764
F775_42450 Aegilops tauschii F775_42450 I 0.764
GLYMA03G37610 Glycine max GLYMA03G37610 I 0.764
GLYMA06G14783 Glycine max GLYMA06G14783 I 0.764
GLYMA19G40220 Glycine max GLYMA19G40220 I 0.764
GRMZM2G115388 Zea mays GRMZM2G115388 I 0.764
GRMZM2G161255 Zea mays GRMZM2G161255 I 0.764
GRMZM2G403590 Zea mays GRMZM2G403590 I 0.764
GRMZM2G703281 Zea mays GRMZM2G703281 I 0.764
MTR_2g067740 Medicago truncatula MTR_2g067740 N 0.764
PGSC0003DMG400011450 Solanum tuberosum PGSC0003DMG400011450 I 0.764
Sb01g034110 Sorghum bicolor Sb01g034110 I 0.764
SELMODRAFT_405785 Selaginella moellendorffii SELMODRAFT_405785 I 0.764
SELMODRAFT_450813 Selaginella moellendorffii SELMODRAFT_450813 I 0.764
SELMODRAFT_450832 Selaginella moellendorffii SELMODRAFT_450832 I 0.764
SELMODRAFT_450839 Selaginella moellendorffii SELMODRAFT_450839 I 0.764
Si037914m.g Setaria italica Si037914m.g I 0.764
Solyc10g078970.1 Solanum lycopersicum Solyc10g078970.1 I 0.764
Solyc10g078990.1 Solanum lycopersicum Solyc10g078990.1 I 0.764
TCM_044725 Theobroma cacao TCM_044725 I 0.764
Traes_5DL_DD8A0F6BE Triticum aestivum Traes_5DL_DD8A0F6BE I 0.764
TRIUR3_34498 Triticum urartu TRIUR3_34498 I 0.764
Ca_23376 Cicer arietinum Ca_23376 N 0.764
Pm008291 Prunus mume Pm008291 I 0.764
cassava45710.m1 Manihot esculenta cassava45710.m1 I 0.764
Bostr.2902s0137 Boechera stricta Bostr.2902s0137 I 0.764
Cagra.3166s0007 Capsella grandiflora Cagra.3166s0007 I 0.764
Carubv10002570m.g Capsella rubella Carubv10002570m.g I 0.764
Carubv10018785m.g Capsella rubella Carubv10018785m.g I 0.764
Ciclev10003844m.g Citrus clementina Ciclev10003844m.g I 0.764
evm.TU.supercontig_116.88 Carica papaya evm.TU.supercontig_116.88 I 0.764
evm.TU.supercontig_1307.1 Carica papaya evm.TU.supercontig_1307.1 I 0.764
gene05169-v1.0-hybrid Fragaria vesca gene05169-v1.0-hybrid I 0.764
gene05263-v1.0-hybrid Fragaria vesca gene05263-v1.0-hybrid I 0.764
Lus10017229.g Linum usitatissimum Lus10017229.g I 0.764
MDP0000121370 Malus domestica MDP0000121370 I 0.764
MDP0000165710 Malus domestica MDP0000165710 I 0.764
orange1.1g046965m.g Citrus sinensis orange1.1g046965m.g I 0.764
Pavir.Ia03096 Panicum virgatum Pavir.Ia03096 I 0.764
Pavir.Ia03263 Panicum virgatum Pavir.Ia03263 I 0.764
Pavir.Ib01788 Panicum virgatum Pavir.Ib01788 I 0.764
Pavir.Ib01803 Panicum virgatum Pavir.Ib01803 I 0.764
Pavir.Ib01877 Panicum virgatum Pavir.Ib01877 I 0.764
Thhalv10015891m.g Eutrema salsugineum Thhalv10015891m.g I 0.764
PK10012.1 Cannabis sativa PK10012.1 I 0.764
chr5.LjT04G07.90.nd Lotus japonicus chr5.LjT04G07.90.nd I 0.764