Lus10034316.g (Linum usitatissimum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Lus10034316.g T008895_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ERF118
M01047_2.00 		Arabidopsis thaliana
NCGCCGYNN
NNRCGGCGN		 PBM
Sullivan et al.(2014)
pTH7330 		0.679 0.760
ERF118
M06591_2.00 		Arabidopsis thaliana
YHDYCKCCGCCGYHD
HDRCGGCGGMGRHDR		 Dap-seq
OMalley et al.(2016)
CRF10_col100_a 		0.679 0.760
ERF118
M06592_2.00 		Arabidopsis thaliana
NGDATCHNDGATTCNNH
DNNGAATCHNDGATHCN		 Dap-seq
OMalley et al.(2016)
CRF10_colamp_a 		0.679 0.760
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10034316 AP2 87 137

Links

Other AP2 family TFs
Other Linum usitatissimum TFs

8 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ERF118 Arabidopsis thaliana AT1G68550 D 0.679
Bostr.26959s0035 Boechera stricta Bostr.26959s0035 I 0.695
Thhalv10019722m.g Eutrema salsugineum Thhalv10019722m.g I 0.685
Gorai.008G183300 Gossypium raimondii Gorai.008G183300 I 0.677
Lus10021678.g Linum usitatissimum Lus10021678.g I 0.721
Lus10035018.g Linum usitatissimum Lus10035018.g N 0.719
Lus10041456.g Linum usitatissimum Lus10041456.g N 0.824
TCM_011811 Theobroma cacao TCM_011811 I 0.677