e_gw.4.260.1_CONSTRUCT (PBM CONSTRUCTS)
ARID/BRIGHT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF01388 (ARID) IPR001606 e_gw.4.260.1_CONSTRUCT T015942_2.00 HughesLab (2013-Jun-13)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
e_gw.4.260.1_CONSTRUCT
M01668_2.00		 PBM CONSTRUCTS
NNNDATHNNN
NNNDATHNNN		 PBM
Weirauch et al.(2014)
pTH5122		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Arid5a
M00116_2.00 		Mus musculus
NHAATATTDNN
NNHAATATTDN		 PBM
Badis et al.(2009)
Arid5a_3770 		0.493 0.581
Arid5a
M01663_2.00 		Rattus norvegicus
NNNRWATHNN
NNDATWYNNN		 PBM
Weirauch et al.(2014)
pTH5121 		0.493 0.581
arid6
M01657_2.00 		Danio rerio
NNRWATYN
NRATWYNN		 PBM
Weirauch et al.(2014)
pTH5120 		0.489 0.558
Arid5b
M01661_2.00 		Mus musculus
NDATWHNN
NNDWATHN		 PBM
Weirauch et al.(2014)
pTH4426 		0.482 0.593
ARID5B
M08707_2.00 		Homo sapiens
DNBKDRTATTSKD
HMSAATAYHMVNH		 Misc
Kulakovskiy et al.(2013)
ARI5B_HUMAN.H11MO.0.C 		0.482 0.593
Arid5b
M08708_2.00 		Mus musculus
DNBKDRTATTSKD
HMSAATAYHMVNH		 Misc
Kulakovskiy et al.(2013)
ARI5B_MOUSE.H11MO.0.C 		0.482 0.593
ARID5B
M09767_2.00 		Homo sapiens
KBDGTATTGTRSWB
VWSYACAATACHVM		 Transfac
Matys et al.(2006)
V$MRF2_01 		0.482 0.593
For this family, TFs with SR scores > 0.422 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M01668_2.00 ARID/BRIGHT 21 107

DNA Binding Domains

Protein ID Domain From To Sequence
e_gw.4.260.1_CONSTRUCT ARID/BRIGHT 21 107

Links

Other ARID/BRIGHT family TFs
Other PBM CONSTRUCTS TFs

148 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000003626 Ailuropoda melanoleuca ENSAMEG00000003626 I 0.482
ENSAMEG00000008932 Ailuropoda melanoleuca ENSAMEG00000008932 I 0.493
Alligator_sinensis_CCG013281.1 Alligator sinensis Alligator_sinensis_CCG013281.1 I 0.506
Alligator_sinensis_CCG017455.1 Alligator sinensis Alligator_sinensis_CCG017455.1 I 0.482
ENSAPLG00000010915 Anas platyrhynchos ENSAPLG00000010915 I 0.482
ARID5B Anolis carolinensis ENSACAG00000010922 I 0.482
GB52601 Apis mellifera GB52601 I 0.423
Afo_R009473 Aptenodytes forsteri Afo_R009473 I 0.482
ENSAMXG00000005409 Astyanax mexicanus ENSAMXG00000005409 I 0.534
ENSAMXG00000006897 Astyanax mexicanus ENSAMXG00000006897 I 0.520
ENSAMXG00000012004 Astyanax mexicanus ENSAMXG00000012004 I 0.506
ACEP16450 Atta cephalotes ACEP16450 I 0.423
ENSBTAP00000008847-D1 Bos grunniens ENSBTAP00000008847-D1 I 0.482
ARID5B Bos taurus ENSBTAG00000006729 I 0.482
ARID5A Bos taurus ENSBTAG00000014090 I 0.493
fgenesh2_pg.scaffold_164000022 Branchiostoma floridae fgenesh2_pg.scaffold_164000022 I 0.455
Brh_R002693 Buceros rhinoceros Brh_R002693 I 0.482
ARID5B Callithrix jacchus ENSCJAG00000007072 I 0.482
ARID5A Callithrix jacchus ENSCJAG00000007759 I 0.493
Aan_R006833 Calypte anna Aan_R006833 I 0.482
Cflo_07446--XP_395512.3_APIME Camponotus floridanus Cflo_07446--XP_395512.3_APIME I 0.423
ARID5A Canis familiaris ENSCAFG00000006546 I 0.493
ARID5B Canis familiaris ENSCAFG00000012991 I 0.482
CapteG220448 Capitella teleta CapteG220448 I 0.508
ENSCPOG00000003685 Cavia porcellus ENSCPOG00000003685 I 0.482
ARID5A Cavia porcellus ENSCPOG00000026444 I 0.493
Cmyd_10001620 Chelonia mydas Cmyd_10001620 I 0.493
Cmyd_10021475 Chelonia mydas Cmyd_10021475 I 0.482
ENSCSAG00000007410 Chlorocebus sabaeus ENSCSAG00000007410 I 0.482
ENSCSAG00000017355 Chlorocebus sabaeus ENSCSAG00000017355 I 0.493
ARID5B Choloepus hoffmanni ENSCHOG00000011695 I 0.482
CLEC013146 Cimex lectularius CLEC013146 I 0.458
ENSCING00000013307 Ciona intestinalis ENSCING00000013307 I 0.476
arid5b Danio rerio ENSDARG00000037196 I 0.506
zgc:77151 Danio rerio ENSDARG00000054307 I 0.520
arid6 Danio rerio ENSDARG00000069988 D 0.489
arid5a Danio rerio ENSDARG00000077120 I 0.502
ARID5A Dasypus novemcinctus ENSDNOG00000035690 I 0.493
ARID5B Dasypus novemcinctus ENSDNOG00000043861 I 0.482
Arid5a Dipodomys ordii ENSDORG00000002540 I 0.493
ARID5B Echinops telfairi ENSETEG00000002612 I 0.482
ARID5B Equus caballus ENSECAG00000019795 I 0.482
ARID5A Equus caballus ENSECAG00000023667 I 0.493
ARID5B Erinaceus europaeus ENSEEUG00000000691 I 0.482
ARID5A Erinaceus europaeus ENSEEUG00000008247 I 0.493
ARID5A Felis catus ENSFCAG00000024950 I 0.493
ARID5B Felis catus ENSFCAG00000026767 I 0.482
ENSFALG00000000299 Ficedula albicollis ENSFALG00000000299 I 0.467
ENSFALG00000013304 Ficedula albicollis ENSFALG00000013304 I 0.482
ENSGMOG00000004984 Gadus morhua ENSGMOG00000004984 I 0.506
ENSGMOG00000008075 Gadus morhua ENSGMOG00000008075 I 0.475
ENSGALG00000002991 Gallus gallus ENSGALG00000002991 I 0.482
ENSGALG00000027335 Gallus gallus ENSGALG00000027335 I 0.467
arid5b Gasterosteus aculeatus ENSGACG00000010603 I 0.506
ENSGACG00000015846 Gasterosteus aculeatus ENSGACG00000015846 I 0.448
Gfo_R015732 Geospiza fortis Gfo_R015732 I 0.482
ARID5B Gorilla gorilla ENSGGOG00000004127 I 0.482
ARID5A Gorilla gorilla ENSGGOG00000017068 I 0.493
Hsal_01506--XP_395512.3_APIME Harpegnathos saltator Hsal_01506--XP_395512.3_APIME I 0.423
ARID5B Homo sapiens ENSG00000150347 D 0.482
ARID5A Homo sapiens ENSG00000196843 I 0.493
XP_002159148.1 Hydra magnipapillata XP_002159148.1 I 0.443
ENSSTOG00000019546 Ictidomys tridecemlineatus ENSSTOG00000019546 I 0.485
ENSSTOG00000023423 Ictidomys tridecemlineatus ENSSTOG00000023423 I 0.455
ENSLACG00000014124 Latimeria chalumnae ENSLACG00000014124 I 0.509
ENSLACG00000015032 Latimeria chalumnae ENSLACG00000015032 I 0.482
ENSLOCG00000005151 Lepisosteus oculatus ENSLOCG00000005151 I 0.489
ENSLOCG00000006809 Lepisosteus oculatus ENSLOCG00000006809 I 0.506
ENSLOCG00000012316 Lepisosteus oculatus ENSLOCG00000012316 I 0.459
ENSLOCG00000015055 Lepisosteus oculatus ENSLOCG00000015055 I 0.511
ARID5A Loxodonta africana ENSLAFG00000009162 I 0.493
ARID5B Loxodonta africana ENSLAFG00000015576 I 0.482
ENSP00000279873 Macaca fascicularis ENSP00000279873 I 0.482
ARID5B Macaca mulatta ENSMMUG00000000424 I 0.482
ARID5A Macaca mulatta ENSMMUG00000030744 I 0.479
ENSMEUG00000005354 Macropus eugenii ENSMEUG00000005354 I 0.440
ENSMEUG00000014406 Macropus eugenii ENSMEUG00000014406 I 0.493
ARID5B Meleagris gallopavo ENSMGAG00000003626 I 0.482
ENSMICG00000010866 Microcebus murinus ENSMICG00000010866 I 0.482
ARID5A Monodelphis domestica ENSMODG00000008611 I 0.493
ARID5B Monodelphis domestica ENSMODG00000017102 I 0.482
ENSMPUG00000008907 Mustela putorius furo ENSMPUG00000008907 I 0.493
ENSMPUG00000011076 Mustela putorius furo ENSMPUG00000011076 I 0.482
Arid5b Mus musculus ENSMUSG00000019947 D 0.482
Arid5a Mus musculus ENSMUSG00000037447 D 0.493
Myotis_brandtii_ARID5A_10013684 Myotis brandtii Myotis_brandtii_ARID5A_10013684 I 0.493
Myotis_brandtii_ARID5B_10031403 Myotis brandtii Myotis_brandtii_ARID5B_10031403 I 0.482
ARID5A Myotis lucifugus ENSMLUG00000003208 I 0.493
ARID5B Myotis lucifugus ENSMLUG00000013447 I 0.482
NV18117 Nasonia vitripennis NV18117 I 0.423
NEMVEDRAFT_v1g81183 Nematostella vectensis NEMVEDRAFT_v1g81183 I 0.785
ENSNLEG00000012110 Nomascus leucogenys ENSNLEG00000012110 I 0.482
ARID5A Ochotona princeps ENSOPRG00000015571 I 0.453
Ocbimv22018673m.g Octopus bimaculoides Ocbimv22018673m.g I 0.440
Ogr03010 Ophisaurus gracilis Ogr03010 I 0.479
Ogr08677 Ophisaurus gracilis Ogr08677 I 0.482
ENSONIG00000000889 Oreochromis niloticus ENSONIG00000000889 I 0.506
ENSONIG00000010644 Oreochromis niloticus ENSONIG00000010644 I 0.511
ARID5B Ornithorhynchus anatinus ENSOANG00000015260 I 0.482
ARID5A Oryctolagus cuniculus ENSOCUG00000012101 I 0.457
ARID5B Oryctolagus cuniculus ENSOCUG00000027029 I 0.482
ENSORLG00000004756 Oryzias latipes ENSORLG00000004756 I 0.506
ENSORLG00000011620 Oryzias latipes ENSORLG00000011620 I 0.511
ENSORLG00000018351 Oryzias latipes ENSORLG00000018351 I 0.520
ARID5A Otolemur garnettii ENSOGAG00000004116 I 0.493
ARID5B Otolemur garnettii ENSOGAG00000015939 I 0.482
ENSOARG00000004403 Ovis aries ENSOARG00000004403 I 0.482
ARID5B Pan troglodytes ENSPTRG00000002534 I 0.482
ARID5A Pan troglodytes ENSPTRG00000012234 I 0.493
ENSPANG00000012565 Papio anubis ENSPANG00000012565 I 0.493
ENSPANG00000022067 Papio anubis ENSPANG00000022067 I 0.482
ENSPSIG00000010908 Pelodiscus sinensis ENSPSIG00000010908 I 0.482
ENSPSIG00000014127 Pelodiscus sinensis ENSPSIG00000014127 I 0.493
ENSPMAG00000002699 Petromyzon marinus ENSPMAG00000002699 I 0.536
ENSPMAG00000009067 Petromyzon marinus ENSPMAG00000009067 I 0.586
ENSPFOG00000010024 Poecilia formosa ENSPFOG00000010024 I 0.520
ENSPFOG00000012334 Poecilia formosa ENSPFOG00000012334 I 0.506
ENSPFOG00000012795 Poecilia formosa ENSPFOG00000012795 I 0.511
ENSPFOG00000022560 Poecilia formosa ENSPFOG00000022560 I 0.480
Pvit_18395 Pogona vitticeps Pvit_18395 I 0.482
ENSPPYG00000002417 Pongo abelii ENSPPYG00000002417 I 0.464
ENSPPYG00000012072 Pongo abelii ENSPPYG00000012072 I 0.493
ARID5B Procavia capensis ENSPCAG00000002044 I 0.482
ARID5A Procavia capensis ENSPCAG00000006363 I 0.493
ARID5A Pteropus vampyrus ENSPVAG00000009400 I 0.493
ARID5B Pteropus vampyrus ENSPVAG00000010482 I 0.482
Arid5a Rattus norvegicus ENSRNOG00000015382 D 0.493
ENSSHAG00000012252 Sarcophilus harrisii ENSSHAG00000012252 I 0.482
ENSSHAG00000018209 Sarcophilus harrisii ENSSHAG00000018209 I 0.493
SINV22144 Solenopsis invicta SINV22144 I 0.495
ARID5B Sorex araneus ENSSARG00000002423 I 0.482
ARID5A Sus scrofa ENSSSCG00000008123 I 0.493
ARID5B Sus scrofa ENSSSCG00000010219 I 0.482
ARID5B Taeniopygia guttata ENSTGUG00000005270 I 0.482
ENSTGUG00000015609 Taeniopygia guttata ENSTGUG00000015609 I 0.467
ENSTRUG00000001547 Takifugu rubripes ENSTRUG00000001547 I 0.520
arid5b Takifugu rubripes ENSTRUG00000010671 I 0.506
ENSTSYG00000010758 Tarsius syrichta ENSTSYG00000010758 I 0.482
tetur19g00310 Tetranychus urticae tetur19g00310 I 0.442
ENSTNIG00000006278 Tetraodon nigroviridis ENSTNIG00000006278 I 0.511
arid5b Tetraodon nigroviridis ENSTNIG00000007478 I 0.506
ENSTNIG00000013457 Tetraodon nigroviridis ENSTNIG00000013457 I 0.466
ARID5A Tursiops truncatus ENSTTRG00000007812 I 0.493
Tal_R007047 Tyto alba Tal_R007047 I 0.482
arid5b Xenopus tropicalis XB-GENE-1007579 I 0.482
ENSXMAG00000001883 Xiphophorus maculatus ENSXMAG00000001883 I 0.511
ENSXMAG00000011937 Xiphophorus maculatus ENSXMAG00000011937 I 0.480
ENSXMAG00000018209 Xiphophorus maculatus ENSXMAG00000018209 I 0.506